Browse Element(s) Details


Os.55404.1.S1_at

Description gb:AK108019.1
DB_XREF= gi:32993228
TID=Os.55404.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-136-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A01, full insert sequence.
FL= gb:AK108019.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g335806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33580Os.55404.1.S1_at6/115+19656771..19657448expressed protein
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55404.1.S1_at--829--8651Chr05:19657282..19657306 (25 bp)
TGGGCCTCCACTGATCGACGACGAG
LOC_Os05g33580
Os.55404.1.S1_at--662--5771Chr05:19657301..19657325 (25 bp)
GACGAGGAGCCAAAAGAACACCATT
LOC_Os05g33580
Os.55404.1.S1_at--105--111Chr05:19657323..19657347 (25 bp)
ATTCGAGCAAGAAGCGATCGCGCGA
LOC_Os05g33580
Os.55404.1.S1_at--132--6391Chr05:19657338..19657362 (25 bp)
GATCGCGCGACGCATTCAGCAAGAA
LOC_Os05g33580
Os.55404.1.S1_at--762--7931Chr05:19657365..19657389 (25 bp)
GGATTAGCATGTGCGGCTGTCTCTC
LOC_Os05g33580
Os.55404.1.S1_at--1018--9531Chr05:19657388..19657412 (25 bp)
TCTACGACTCTTCCATCGATTCATC
LOC_Os05g33580
Os.55404.1.S1_at--204--5091Chr05:19657467..19657491 (25 bp)
GCACGTACATACCTCTGCTTCGATC
NONE
Os.55404.1.S1_at--540--10791Chr05:19657513..19657537 (25 bp)
TTGTAAGGGCAAAGCTTGGCGCGAA
NONE
Os.55404.1.S1_at--793--9152Chr05:19657549..19657573 (25 bp)
TGCCCGTGATCTGGAGCCGGTCGTC
NONE
Os.55404.1.S1_at--1108--5951Chr05:19657583..19657607 (25 bp)
GAGAATGGCATTGTCGGGAAGATTT
NONE
Os.55404.1.S1_at--74--6651Chr05:19657622..19657646 (25 bp)
GTTGTTAATCGAATCTTGACTTCAA
NONE
Target Sequence 
TGGGCCTCCACTGATCGACGACGAGGAGCCAAAAGAACACCATTCGAGCAAGAAGCGATCGCGCGACGCATTCAGCAAGA
AGGGGATTAGCATGTGCGGCTGTCTCTCTACGACTCTTCCATCGATTCATCTCGTCCTCTAGCTCTCCCTCCCTCTCCAA
TGGCGCCGTCAAGGCCATGGCCCGCGCACGTACATACCTCTGCTTCGATCCGCCTGCCTTCCCTGCCGTTTTTGTAAGGG
CAAAGCTTGGCGCGAAGCGAGGGCGCGTGCCCGTGATCTGGAGCCGGTCGTCGGAGAGGGAGAGAATGGCATTGTCGGGA
AGATTTGATGTGATCTAGATGTTGTTAATCGAATCTTGACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis