Browse Element(s) Details


Os.50625.1.S1_at

Description gb:AK122177.1
DB_XREF= gi:37991823
TID=Os.50625.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full insert sequence.
FL= gb:AK122177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3343010/11Basic 7S globulin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed
LOC_Os05g33440Os.51907.1.S1_at11/115+19566582..19567950mTERF family protein, expressed
LOC_Os05g33450NANA5+19570712..19571221xanthine/uracil/vitamin C permease family protein, putative
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed
LOC_Os05g33470NANA5+19578271..19581203hypothetical protein
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50625.1.S1_at--941--6011Chr05:19563717..19563741 (25 bp)
GAGAGATCCATCCACCAGGCGGTGA
LOC_Os05g33430
Os.50625.1.S1_at--388--8931Chr05:19563739..19563763 (25 bp)
TGACCGACGCGTTCGCGAAGGAGAT
LOC_Os05g33430
Os.50625.1.S1_at--950--4071Chr05:19563856..19563880 (25 bp)
CGACCATCGAGCTGGTGCTGCAAAG
LOC_Os05g33430
Os.50625.1.S1_at--736--8591Chr05:19563868..19563892 (25 bp)
TGGTGCTGCAAAGCACGGGTGCCTC
LOC_Os05g33430
Os.50625.1.S1_at--573--7151Chr05:19564073..19564097 (25 bp)
GTCTCGGCAGACGACCTGCAATAAT
LOC_Os05g33430
Os.50625.1.S1_at--331--9011Chr05:19564089..19564113 (25 bp)
TGCAATAATTTTCGCCTCGGCTAGC
LOC_Os05g33430
Os.50625.1.S1_at--1088--4451Chr05:19564102..19564126 (25 bp)
GCCTCGGCTAGCATGTAGCAGTGCT
LOC_Os05g33430
Os.50625.1.S1_at--405--1531Chr05:19564118..19564142 (25 bp)
AGCAGTGCTGGCATTTGCCCCGTTC
LOC_Os05g33430
Os.50625.1.S1_at--578--4191NONE
CCGTTCCCAAGTATGCATGTCCATA
NONE
Os.50625.1.S1_at--69--4951Chr05:19564112..19564175 (25 bp)
GCATGTCCATACCTACAAATTTTGG
LOC_Os05g33430
Os.50625.1.S1_at--653--9771Chr05:19564199..19564223 (25 bp)
TAAGGCCTTATGTCTGAAAATACCA
LOC_Os05g33430
Target Sequence 
GAGAGATCCATCCACCAGGCGGTGACCGACGCGTTCGCGAAGGAGATGGCCGCGATCCCGCGAGCACCGGCAGTGGAGCC
GTTCAAGCTGTGCTACGACGGGAGGAAGGTGGGGAGCACGCGCGTGGGGCCGGCCGTGCCGACCATCGAGCTGGTGCTGC
AAAGCACGGGTGCCTCGTGGGTTGTGTTCGGGGCGAACTCGATGGTGGCCACCAAGGGAGGCGCGCTCTGCCTCGGCGTG
GTGGACGCCGGCACGGAGCCGCAGACGTCGGTTGTGATCGGTGGGCACATGATGGAGGACAACCTGCTGGAGTTTGACCT
GGAGGCATCGCGGCTGGGGTTCAGTTCATACCTCCCGTCTCGGCAGACGACCTGCAATAATTTTCGCCTCGGCTAGCATG
TAGCAGTGCTGGCATTTGCCCCGTTCCCAAGTATGCATGTCCATACCTACAAATTTTGGGTCCCCCGGTGTTTAACACAA
AATAAGGCCTTATGTCTGAAAATACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis