Browse Element(s) Details


OsAffx.27138.1.S1_at

Description tigr:9633.m03074
TID=OsAffx.27138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to potential cation-transporting atpase (ec 3.6.3.-). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3339011/11Cation-transporting ATPase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27138.1.S1_at--945--10211Chr05:19527216..19527240 (25 bp)
TATTCTGTGCATACGTCTTCCTTTC
LOC_Os05g33390
OsAffx.27138.1.S1_at--893--4312Chr05:19527192..19527216 (25 bp)
CCATTCTTGGTCAGTTTGCCATGCA
LOC_Os05g33390
OsAffx.27138.1.S1_at--800--10691Chr05:19527177..19527201 (25 bp)
TTGCCATGCACTTGTTCTTCCTGAT
LOC_Os05g33390
OsAffx.27138.1.S1_at--139--8851Chr05:19527156..19527180 (25 bp)
TGATCTCAGCCGTCAATGAAGCAAC
LOC_Os05g33390
OsAffx.27138.1.S1_at--761--4351Chr05:19527121..19527145 (25 bp)
CCAGAGGAGTGCATTGAGCCTGATT
LOC_Os05g33390
OsAffx.27138.1.S1_at--188--5871Chr05:19527106..19527130 (25 bp)
GAGCCTGATTCAGAGTTCCACCCAA
LOC_Os05g33390
OsAffx.27138.1.S1_at--952--10631Chr05:19527091..19527115 (25 bp)
TTCCACCCAAACCTTGTGAACACAG
LOC_Os05g33390
OsAffx.27138.1.S1_at--270--6371Chr05:19527044..19527068 (25 bp)
GATCCAGGTTGCAACCTTTGCAGTA
LOC_Os05g33390
OsAffx.27138.1.S1_at--1115--7591Chr05:19527010..19527034 (25 bp)
GGGCACCCATTTAACCAGAGTATAA
LOC_Os05g33390
OsAffx.27138.1.S1_at--926--2211Chr05:19526979..19527003 (25 bp)
ACAAGCCCTTCAAGTATGCTCTATA
LOC_Os05g33390
OsAffx.27138.1.S1_at--865--4671Chr05:19526807..19526831 (25 bp)
GCGGATTTTGCGATGGGCGTTCCCA
LOC_Os05g33390
Target Sequence 
TATTCTGTGCATACGTCTTCCTTTCCATTCTTGGTCAGTTTGCCATGCACTTGTTCTTCCTGATCTCAGCCGTCAATGAA
GCAACCAAGTATATGCCAGAGGAGTGCATTGAGCCTGATTCAGAGTTCCACCCAAACCTTGTGAACACAGTTTCATACAT
GGTGAACATGATGATCCAGGTTGCAACCTTTGCAGTAAACTACATGGGGCACCCATTTAACCAGAGTATAACAGAGAACA
AGCCCTTCAAGTATGCTCTATATGCAGCAGTTGCTTTCTTCACAGTGATCACATCAGATATGTTCAGGGATCTAAATGAC
TACATGAAGCTTGAACCCCTGCCTGAAGGAATGAGGGGCAAACTGATGCTTTGGGCTATCCTTATGTTTTGTGGCTGCTA
TGGATGGGAGCGGATTTTGCGATGGGCGTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis