Browse Element(s) Details


Os.8613.1.S1_at

Description gb:AK070043.1
DB_XREF= gi:32980067
TID=Os.8613.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full insert sequence.
FL= gb:AK104366.1 gb:AK104199.1 gb:AK070043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3336010/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33340OsAffx.19542.3.S1_x_at5/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.21754.1.S1_x_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.17151.1.S1_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os05g33370Os.14919.1.S1_at6/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370Os.56216.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33370OsAffx.29313.1.S1_at1/115+19516907..19522751transposon protein, putative, Mutator sub-class
LOC_Os05g33380Os.2697.1.S1_a_at11/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33380Os.8999.3.S1_x_at2/115+19523585..19525771Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g33390OsAffx.27138.1.S1_at11/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.17830.1.S1_at10/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390Os.49370.1.S1_x_at5/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.5828.2.S1_at3/115+19526329..19541305Cation-transporting ATPase, putative, expressed
LOC_Os05g33390OsAffx.8984.1.S1_x_at1/115+19526329..19541305Cation-transporting ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8613.1.S1_at--1027--8571Chr05:19505926..19505950 (25 bp)
TGGTTGCCTCTTTGACTGCGTATAC
LOC_Os05g33360
Os.8613.1.S1_at--858--3811Chr05:19505911..19505935 (25 bp)
CTGCGTATACTTTCTGGGCTTCAAA
LOC_Os05g33360
Os.8613.1.S1_at--1014--10851Chr05:19505863..19505887 (25 bp)
TTGGACCAATTCTGTTTTCTGCTCT
LOC_Os05g33360
Os.8613.1.S1_at--390--1551Chr05:19505711..19505843 (25 bp)
AGCTTTATTCAGGTGTTCTTCCCAT
LOC_Os05g33360
Os.8613.1.S1_at--432--6811Chr05:19505642..19505666 (25 bp)
GTTTTCTCAGGTTTCATCATCTACG
LOC_Os05g33360
Os.8613.1.S1_at--32--2371Chr05:19505601..19505625 (25 bp)
AAAGCGCCACACTTATGACGACTAC
LOC_Os05g33360
Os.8613.1.S1_at--240--691Chr05:19505587..19505611 (25 bp)
ATGACGACTACATTTGGGCCTCTGT
LOC_Os05g33360
Os.8613.1.S1_at--972--2511Chr05:19505454..19505478 (25 bp)
AACTTGCTCAGTGACGTCAGTGTGT
LOC_Os05g33360
Os.8613.1.S1_at--833--3451Chr05:19505437..19505461 (25 bp)
CAGTGTGTCCTGCTCTATTAAGTAC
LOC_Os05g33360
Os.8613.1.S1_at--42--6291Chr05:19505373..19505397 (25 bp)
GATGTATTTTGCTGTCGTCTGACTC
LOC_Os05g33360
Os.8613.1.S1_at--1147--9731Chr05:19505254..19505278 (25 bp)
TAATTTTTACCCTGCGATGTTCGTG
NONE
Target Sequence 
TGGTTGCCTCTTTGACTGCGTATACTTTCTGGGCTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCTGTTT
TCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGGCTCTGGACCAGTTGCATTGTTTGG
TGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCTACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACT
ACATTTGGGCCTCTGTTGAGCTCTACCTTGACATCCTCAACTTGTNCCTTTATATCCTGAACATGATCAGGAGCATGCAA
AGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATT
AAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTATTTTGCTGTCGTCTGACTCAAAGGATGAG
ACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGACTGTCGGAAATGTGATCCCATGATTGTGACGTGGTG
CCAATAATTTTTACCCTGCGATGTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis