Browse Element(s) Details


OsAffx.17151.1.S1_at

Description tigr:9636.m02502
TID=OsAffx.17151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein
LOC_Os05g33330Os.47463.1.S1_x_at6/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33330Os.14491.2.S1_x_at5/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.19542.3.S1_x_at5/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.21754.1.S1_x_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.17151.1.S1_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33350OsAffx.14938.1.S1_at10/115+19500485..19502270hypothetical protein
LOC_Os05g33360Os.8613.1.S1_at10/115+19505254..19507583Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17151.1.S1_at--252--7751Chr08:15382695..15382719 (25 bp)
GGTGTTCTTGGATGCTACTAGAGGC
NONE
OsAffx.17151.1.S1_at--921--10451Chr08:15382724..15382748 (25 bp)
TTAGCTATACTTATCACAGTGCATT
NONE
OsAffx.17151.1.S1_at--933--4952Chr08:15382779..15382803 (25 bp)
GCATATGCATGTGAGGTTCGTCCCT
NONE
OsAffx.17151.1.S1_at--765--6151Chr08:15382791..15382815 (25 bp)
GAGGTTCGTCCCTGATGAAAATCAC
NONE
OsAffx.17151.1.S1_at--593--2011Chr08:15382814..15382838 (25 bp)
ACTATGCATACGTGGAGGTCAAACT
NONE
OsAffx.17151.1.S1_at--929--7811Chr08:15382830..15382854 (25 bp)
GGTCAAACTACGTCCTTACATATAT
NONE
OsAffx.17151.1.S1_at--634--5691Chr08:15382855..15382879 (25 bp)
GACTTTGGGAGCTTCTCAACTTTTG
NONE
OsAffx.17151.1.S1_at--883--7733Chr08:15382954..15382978 (25 bp)
GGTGGGTCGGACGATTTCCACAATA
NONE
OsAffx.17151.1.S1_at--826--9031Chr08:15383018..15383042 (25 bp)
TAGTCCCAATTTATTACTCCAACGG
NONE
OsAffx.17151.1.S1_at--299--8114Chr08:15383042..15383066 (25 bp)
GGACTAAGAGATACCAACCGGGAGT
NONE
OsAffx.17151.1.S1_at--433--10351Chr08:15383077..15383101 (25 bp)
TTTAGTCCCGGTTTGGCCTCTGATA
NONE
Target Sequence 
GGTGTTCTTGGATGCTACTAGAGGCAATTTTAGCTATACTTATCACAGTGCATTAGCTAGTCATACAATTTTGCTGATGC
TTGTGCATATGCATGTGAGGTTCGTCCCTGATGAAAATCACTATGCATACGTGGAGGTCAAACTACGTCCTTACATATAT
GACTTTGGGAGCTTCTCAACTTTTGGAGGATTCACTATGAACAGCATGTGTAAAGGGTATGAGAGTGGCTTAATAGTCAC
TACTGGAGAAATGATCTTTGGTGGGTCGGACGATTTCCACAATAGTCCCAGTTCCAAAAAGAACCGGGACAAAAGAGGTT
TATTAGTCCCAATTTATTACTCCAACGGGACTAAGAGATACCAACCGGGAGTAAAGATCATCTTTAGTCCCGGTTTGGCC
TCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis