Browse Element(s) Details


OsAffx.14937.1.S1_at

Description tigr:9633.m03063
TID=OsAffx.14937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3332010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein
LOC_Os05g33330Os.47463.1.S1_x_at6/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33330Os.14491.2.S1_x_at5/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.19542.3.S1_x_at5/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.21754.1.S1_x_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33340OsAffx.17151.1.S1_at1/115+19471491..19486061transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14937.1.S1_at--85--4251Chr05:19449775..19449799 (25 bp)
CCGTCCTCCACATGCAGAAGTTCTA
LOC_Os05g33320
OsAffx.14937.1.S1_at--47--1931Chr05:19449665..19449689 (25 bp)
ACGGTGATCCACGAGCCCATGGACG
LOC_Os05g33320
OsAffx.14937.1.S1_at--680--5011Chr05:19449600..19449624 (25 bp)
GCAGGAGCCCGACCACGACCATGTA
LOC_Os05g33320
OsAffx.14937.1.S1_at--638--731Chr05:19449580..19449604 (25 bp)
ATGTACCTCAGGATCCGGCACCGGA
LOC_Os05g33320
OsAffx.14937.1.S1_at--547--7571Chr05:19449481..19449505 (25 bp)
GGGAAGATTCCTCCGGAGATTCGTC
LOC_Os05g33320
OsAffx.14937.1.S1_at--655--6051Chr05:19449466..19449490 (25 bp)
GAGATTCGTCGGAGCGCAAGGCACC
LOC_Os05g33320
OsAffx.14937.1.S1_at--1123--5871Chr05:19449455..19449479 (25 bp)
GAGCGCAAGGCACCCTCCACGGAAG
LOC_Os05g33320
OsAffx.14937.1.S1_at--768--7231NONE
GTCGCTGACGGACAATTGTCATCAT
NONE
OsAffx.14937.1.S1_at--754--3172Chr05:19448126..19448150 (25 bp)
AATTGTCATCATCATTTTGTCCTGG
LOC_Os05g33320
OsAffx.14937.1.S1_at--1109--3551Chr05:19448120..19448144 (25 bp)
CATCATCATTTTGTCCTGGTTTGGG
LOC_Os05g33320
OsAffx.14937.1.S1_at--493--9731Chr05:19448081..19448105 (25 bp)
TAATTAGGGACGGTCGTTGTCCTCT
LOC_Os05g33320
Target Sequence 
CCGTCCTCCACATGCAGAAGTTCTACTCCGTCGCCGACGTTGCCGCCGAGCTCCGCCGCGTCGCGGACGCCCGCGCCTCC
GCCGCCTACTCCGAGGAGGAGGCGGCGTCCACGGTGATCCACGAGCCCATGGACGAGCTCGTCGCCATGGCCGCCGAGCC
GGAGCCGGAGCAGGAGCAGGAGCCCGACCACGACCATGTACCTCAGGATCCGGCACCGGAGCCGGAGCCTGACGGCGCCG
TCAACAACCCCGTCTCCCCCACCGCCGCCGAGGTGCTGGACCACGAGGCGGACGGGGAAGATTCCTCCGGAGATTCGTCG
GAGCGCAAGGCACCCTCCACGGAAGATGACGCCGTCGCTGACGGACAATTGTCATCATCATTTTGTCCTGGTTTGGGGGG
TGTCAAAAACGTAATTAGGGACGGTCGTTGTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis