Browse Element(s) Details


OsAffx.14936.1.S1_at

Description tigr:9633.m03061
TID=OsAffx.14936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tat (twin-arginine translocation) pathway signal sequence, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333009/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14936.1.S1_at--499--3171Chr05:19431612..19431636 (25 bp)
CAATGTCCCCTTGCGCGTTCGGTTT
LOC_Os05g33300
OsAffx.14936.1.S1_at--1078--4631Chr05:19431626..19431650 (25 bp)
GCGTTCGGTTTCCTCAGGCATTGTA
LOC_Os05g33300
OsAffx.14936.1.S1_at--117--10671Chr05:19431635..19431659 (25 bp)
TTCCTCAGGCATTGTAGTCGCGCGA
LOC_Os05g33300
OsAffx.14936.1.S1_at--930--9631Chr05:19431639..19431663 (25 bp)
TCAGGCATTGTAGTCGCGCGAGGCC
LOC_Os05g33300
OsAffx.14936.1.S1_at--920--6211Chr05:19431658..19431682 (25 bp)
GAGGCCGCGAGCTCAACATTTTGGT
LOC_Os05g33300
OsAffx.14936.1.S1_at--188--8411Chr05:19431660..19431684 (25 bp)
GGCCGCGAGCTCAACATTTTGGTTT
LOC_Os05g33300
OsAffx.14936.1.S1_at--103--9791Chr05:19431685..19431709 (25 bp)
TAACCTCGGAATTTTATCGACAAAT
LOC_Os05g33300
OsAffx.14936.1.S1_at--531--171Chr05:19431695..19431719 (25 bp)
ATTTTATCGACAAATCAGGAGTTCA
LOC_Os05g33300
OsAffx.14936.1.S1_at--218--391NONE
ATCACATTCCTAGAGTTGTCTCACT
NONE
OsAffx.14936.1.S1_at--112--4311Chr05:19432044..19432359 (25 bp)
CCTAGAGTTGTCTCACTGTGTTATG
LOC_Os05g33300
OsAffx.14936.1.S1_at--680--3331NONE
CACTGTGTTATGCAAGGTGGCGCAA
NONE
Target Sequence 
CAATGTCCCCTTGCGCGTTCGGTTTCCTCAGGCATTGTAGTCGCGCGAGGCCGCGAGCTCAACATTTTGGTTTTAACCTC
GGAATTTTATCGACAAATCAGGAGTTCAACGTCGGGATGACCTACTACGGCGACAAGGCGAAGCCCAGGACATACGCTGC
TCGCTTCGCGTCTCCGGACAGGTCTGAACTTGTAAGCGTGGTAATTAAGCCATCGAATCAGCTCAAAATCACATTCCTAG
AGTTGTCTCACTGTGTTATGCAAGGTGGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis