Browse Element(s) Details


Os.27259.1.S1_at

Description gb:AK065701.1
DB_XREF= gi:32975719
TID=Os.27259.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037E09, full insert sequence.
FL= gb:AK065701.1 gb:AK067898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3326010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000105biological_processhistidine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0003949molecular_function1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27259.1.S1_at--784--7511NONE
GGGACGTTATTCACCTATACCTGTA
NONE
Os.27259.1.S1_at--548--8871Chr05:19413682..19413706 (25 bp)
TGATGTTACGGTTGGGAGTGCCCTT
LOC_Os05g33260
Os.27259.1.S1_at--960--6031Chr05:19413720..19413744 (25 bp)
GAGATTTGCCCTACAAGGACGTCGT
LOC_Os05g33260
Os.27259.1.S1_at--622--3211Chr05:19413733..19413757 (25 bp)
CAAGGACGTCGTTCTTTGGCACAAG
LOC_Os05g33260
Os.27259.1.S1_at--351--9811Chr05:19413805..19413829 (25 bp)
TAACCTGTTCCATCAGCTCGATTGT
LOC_Os05g33260
Os.27259.1.S1_at--99--6591Chr05:19413824..19413848 (25 bp)
GATTGTTATGCACAGACCTCCAGGG
LOC_Os05g33260
Os.27259.1.S1_at--1008--3151Chr05:19413895..19413919 (25 bp)
AATTCGATGGGTCTTCTGTGGTATA
LOC_Os05g33260
Os.27259.1.S1_at--907--9431Chr05:19413947..19413971 (25 bp)
TCGGATCTGGAACTAGGCTTTACAT
LOC_Os05g33260
Os.27259.1.S1_at--1061--931Chr05:19413974..19413998 (25 bp)
AGGACTGGCCGAGCTGTTTATCAAG
LOC_Os05g33260
Os.27259.1.S1_at--976--2671Chr05:19413996..19414020 (25 bp)
AAGCGACTGCACTATATGTTTTTGA
LOC_Os05g33260
Os.27259.1.S1_at--831--2091Chr05:19414052..19414076 (25 bp)
ACATCTACTGAGTTAGCCCGTCTGA
LOC_Os05g33260
Target Sequence 
GGGACGTTATTCACCTATACCTGTAACTTATGCTGGGGGTGTGTCTACAATGGATGACCTAGAGAGGATAAAAAGAGCAG
GCAACAGTCGAGTTGATGTTACGGTTGGGAGTGCCCTTGATATATTCGGAGGAGATTTGCCCTACAAGGACGTCGTTCTT
TGGCACAAGGAACAAAATATGGTTAGCCAACCATGATATATCAGAGGTATAATGCTTAACCTGTTCCATCAGCTCGATTG
TTATGCACAGACCTCCAGGGTCTAGAAGTAATGCTAATGCATTTTCTCAAGTGTTGTACTGCGAATAATTCGATGGGTCT
TCTGTGGTATAAGTTCAAGCTGAAGGGTTCGATTTTGTTCGGATCTGGAACTAGGCTTTACATTGAGGACTGGCCGAGCT
GTTTATCAAGCGACTGCACTATATGTTTTTGAGATTAAAACACTGTTAACATGATATGTAAGCACATCTACTGAGTTAGC
CCGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis