Browse Element(s) Details


Os.47979.1.A1_s_at

Description gb:AK062513.1
DB_XREF= gi:32972531
TID=Os.47979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C04, full insert sequence.
FL= gb:AK062513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3322011/11AWPM-19-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47979.1.A1_s_at--896--1811Chr05:19397710..19397734 (25 bp)
ACGCCGTTGTGATCTTCTCCTGCCT
LOC_Os05g33220
Os.47979.1.A1_s_at--1074--8671Chr05:19397717..19397741 (25 bp)
TGTGATCTTCTCCTGCCTCGGAGAG
LOC_Os05g33220
Os.47979.1.A1_s_at--595--9491Chr05:19397725..19397749 (25 bp)
TCTCCTGCCTCGGAGAGCAGAGCAA
LOC_Os05g33220
Os.47979.1.A1_s_at--804--1331Chr05:19397749..19397773 (25 bp)
AGAGGGAAGATCAGCAATGGCGACC
LOC_Os05g33220
Os.47979.1.A1_s_at--197--7711Chr05:19397776..19397800 (25 bp)
GGGTCCCAGTTCCATGTCCGCTGGC
LOC_Os05g33220
Os.47979.1.A1_s_at--204--8531Chr05:19398668..19398692 (25 bp)
TGGAGACGTTCACCATCATCTTGGC
LOC_Os05g33220
Os.47979.1.A1_s_at--1035--9731Chr05:19398825..19398849 (25 bp)
TCAATCTTGGGCGACGGTTTGGTTT
LOC_Os05g33220
Os.47979.1.A1_s_at--10--9931Chr05:19398868..19398892 (25 bp)
TACGTACGTGTACGCGCGTGAGGAG
LOC_Os05g33220
Os.47979.1.A1_s_at--971--731Chr05:19398931..19398955 (25 bp)
ATGTATATCCGTGTGGTCGTGGCGA
LOC_Os05g33220
Os.47979.1.A1_s_at--784--251Chr05:19398935..19398959 (25 bp)
ATATCCGTGTGGTCGTGGCGAATTT
LOC_Os05g33220
Os.47979.1.A1_s_at--931--7791Chr05:19398945..19398969 (25 bp)
GGTCGTGGCGAATTTGTTCATTTGT
LOC_Os05g33220
Target Sequence 
ACGCCGTTGTGATCTTCTCCTGCCTCGGAGAGCAGAGCAAGAGGGAAGATCAGCAATGGCGACCGGGGGTCCCAGTTCCA
TGTCCGCTGGCCTCCTCTTCCTCACCCTCACCTGGAGACGTTCACCATCATCTTGGCCGGGACGCAGCTGCTGTGCGCCG
GGTCGCTGCACGCCGGAGCACACGTAGCCATCATACAGAATCCGATGGTTAGCAGAGTGTGAGGGCGTCGTCGACCGGGT
CGAGGAGGAGGATTCTGTGCAAAACCGTATCAATCTTGGGCGACGGTTTGGTTTGTGGTGTACGTACGTGCGTACGTACG
TGTACGCGCGTGAGGAGGAACGTTGTGTTGATTTATGCTAGTGTGTTGTGTGTGGATGTATATCCGTGTGGTCGTGGCGA
ATTTGTTCATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47979.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis