Browse Element(s) Details


Os.47979.1.A1_at

Description gb:AK062513.1
DB_XREF= gi:32972531
TID=Os.47979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C04, full insert sequence.
FL= gb:AK062513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3322010/11AWPM-19-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47979.1.A1_at--17--10671NONE
TTCCTCACCCTCACCTGGAGACGTT
NONE
Os.47979.1.A1_at--324--1831Chr05:19398725..19398749 (25 bp)
ACGCCGGAGCACACGTAGCCATCAT
LOC_Os05g33220
Os.47979.1.A1_at--847--4151Chr05:19398726..19398750 (25 bp)
CGCCGGAGCACACGTAGCCATCATA
LOC_Os05g33220
Os.47979.1.A1_at--779--3951Chr05:19398729..19398753 (25 bp)
CGGAGCACACGTAGCCATCATACAG
LOC_Os05g33220
Os.47979.1.A1_at--512--8071Chr05:19398730..19398754 (25 bp)
GGAGCACACGTAGCCATCATACAGA
LOC_Os05g33220
Os.47979.1.A1_at--437--5951Chr05:19398731..19398755 (25 bp)
GAGCACACGTAGCCATCATACAGAA
LOC_Os05g33220
Os.47979.1.A1_at--891--6151Chr05:19398803..19398827 (25 bp)
GAGGATTCTGTGCAAAACCGTATCA
LOC_Os05g33220
Os.47979.1.A1_at--387--7931Chr05:19398805..19398829 (25 bp)
GGATTCTGTGCAAAACCGTATCAAT
LOC_Os05g33220
Os.47979.1.A1_at--63--4051Chr05:19398896..19398920 (25 bp)
CGTTGTGTTGATTTATGCTAGTGTG
LOC_Os05g33220
Os.47979.1.A1_at--720--7411Chr05:19398900..19398924 (25 bp)
GTGTTGATTTATGCTAGTGTGTTGT
LOC_Os05g33220
Os.47979.1.A1_at--528--10791Chr05:19398903..19398927 (25 bp)
TTGATTTATGCTAGTGTGTTGTGTG
LOC_Os05g33220
Target Sequence 
TTCCTCACCCTCACCTGGAGACGTTCACCATCATCTTGGCCGGGACGCAGCTGCTGTGCGCCGGGTCGCTGCACGCCGGA
GCACACGTAGCCATCATACAGAATCCGATGGTTAGCAGAGTGTGAGGGCGTCGTCGACCGGGTCGAGGAGGAGGATTCTG
TGCAAAACCGTATCAATCTTGGGCGACGGTTTGGTTTGTGGTGTACGTACGTGCGTACGTACGTGTACGCGCGTGAGGAG
GAACGTTGTGTTGATTTATGCTAGTGTGTTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47979.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis