Browse Element(s) Details


Os.53333.1.S1_at

Description gb:AK072045.1
DB_XREF= gi:32982068
TID=Os.53333.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108A03, full insert sequence.
FL= gb:AK072045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3323011/11Cobalt transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53333.1.S1_at--1012--7991Chr05:19404488..19404512 (25 bp)
GGATGTCTTTTCATTACTTTGCCTA
LOC_Os05g33230
Os.53333.1.S1_at--71--10491Chr05:19404501..19404525 (25 bp)
TTACTTTGCCTATTTGCTCTAGTGG
LOC_Os05g33230
Os.53333.1.S1_at--168--971Chr05:19404740..19404764 (25 bp)
AGGAGCCCCTTCTGTGTAGTGGAAT
LOC_Os05g33230
Os.53333.1.S1_at--621--6451Chr05:19404822..19404846 (25 bp)
GATCAAGTGTATGCACCGCAAGCCC
LOC_Os05g33230
Os.53333.1.S1_at--810--5331Chr05:19404863..19404887 (25 bp)
GAAAGGTTAACCTCTGGCTCTAACT
LOC_Os05g33230
Os.53333.1.S1_at--1156--5071Chr05:19404893..19405002 (25 bp)
GCAGCCTTGCAGGAGCAGTGCCGTA
LOC_Os05g33230
Os.53333.1.S1_at--299--7291Chr05:19404995..19405019 (25 bp)
GTGCCGTATGCAGATCCTTCATTGA
LOC_Os05g33230
Os.53333.1.S1_at--224--2331Chr05:19405057..19405081 (25 bp)
AAAGTATACTTCCTGTCTTCATTAG
LOC_Os05g33230
Os.53333.1.S1_at--579--8931Chr05:19405109..19405133 (25 bp)
TGACCGCTGTGTTCTTGCTAACTTA
LOC_Os05g33230
Os.53333.1.S1_at--478--9091Chr05:19405124..19405148 (25 bp)
TGCTAACTTATTGTATCTGCCCTTA
LOC_Os05g33230
Os.53333.1.S1_at--188--9171Chr05:19405141..19405165 (25 bp)
TGCCCTTAGCTTGATCCTAACATGA
LOC_Os05g33230
Target Sequence 
GGATGTCTTTTCATTACTTTGCCTATTTGCTCTAGTGGCCCTGGCTTCCATTTCGGACAAATTGGTTTGATGGAATCAGG
AACTAAAGACTATCACGACAACTTCATCCCCTTAATTGCTTAAAAATGCTGAGTTGCAAAATCAGTTTTTGGGGCATCTT
AGGAGCCCCTTCTGTGTAGTGGAATCGTGGAAACGATGGTAACGATTGAATCGTCAGGAAGATCATTTTGGAAGATCATT
TTGATCAAGTGTATGCACCGCAAGCCCCTTTGGAAGGAAGACTGAAAGGTTAACCTCTGGCTCTAACTTCTTTGCAGCCT
TGCAGGAGCAGTGCCGTATGCAGATCCTTCATTGAAGGACCACGTGAGAATATTGAGTATAACTGCACAATCAAAGTATA
CTTCCTGTCTTCATTAGGAAGTGCCGTCAAGAACTTAAGTGGGGTGACCGCTGTGTTCTTGCTAACTTATTGTATCTGCC
CTTAGCTTGATCCTAACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis