Browse Element(s) Details


Os.12714.1.S1_at

Description gb:AK058850.1
DB_XREF= gi:32968868
TID=Os.12714.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-H10, full insert sequence.
FL= gb:AK058850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g333101/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein
LOC_Os05g33330Os.47463.1.S1_x_at6/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g33330Os.14491.2.S1_x_at5/115+19470381..19471375transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12714.1.S1_at--212--1451Chr05:19442524..19442548 (25 bp)
AGAAGCGCCGGTTCTCGGCGATGAT
LOC_Os05g33310
Os.12714.1.S1_at--415--6211Chr05:19442489..19442513 (25 bp)
GAGGCCCAGGGCTGACATCAACAAC
NONE
Os.12714.1.S1_at--139--7511Chr05:19442424..19442448 (25 bp)
GTGGTCACCATTAGGCCGCATTTTC
NONE
Os.12714.1.S1_at--411--5511Chr05:19442353..19442377 (25 bp)
GAAAACGCGCGGGAAGTTCAGTCTT
NONE
Os.12714.1.S1_at--922--6731Chr05:19442338..19442362 (25 bp)
GTTCAGTCTTAATCGGTGTGTCCTC
NONE
Os.12714.1.S1_at--400--4291Chr05:19442317..19442341 (25 bp)
CCTCCCTGTGAATTTTGTCGTCGAA
NONE
Os.12714.1.S1_at--693--3891Chr05:19442285..19442309 (25 bp)
CTGGTTGTTTTTGTTTGGTCTGCCT
NONE
Os.12714.1.S1_at--949--7151Chr05:19442268..19442292 (25 bp)
GTCTGCCTGTAATTTAGCCCGGGTG
NONE
Os.12714.1.S1_at--131--6291Chr05:19442128..19442152 (25 bp)
GATGTTCATGTCCTGCTGAGTTTGC
NONE
Os.12714.1.S1_at--58--1311Chr05:19442080..19442104 (25 bp)
AGATGATGCGTCTGGTGTTGCTCAC
NONE
Os.12714.1.S1_at--519--9091Chr05:19442062..19442086 (25 bp)
TGCTCACTTTGTTTGGTTTGTACCA
NONE
Target Sequence 
AGAAGCGCCGGTTCTCGGCGATGATGTCGCCGATCGAGGCCCAGGGCTGACATCAACAACGTCACCTCACCGGACCTCGC
CACGCCTCNGCCGGCGTCGTCGTGGTCACCATTAGGCCGCATTTTCTTCTTCTTTGAGGCAAACAAAAAAAAANANAANG
AAAAAAAAAGTCGAAAACGCGCGGGAAGTTCAGTCTTAATCGGTGTGTCCTCCCTGTGAATTTTGTCGTCGAAGTGGTGA
CTGGTTGTTTTTGTTTGGTCTGCCTGTAATTTAGCCCGGGTGTGAGTAGCAGAGATGGAAGCGGTAGAATATATGGGTAG
GCATAGTTGAGCTCAGGATCAATCAGGAACAGTGTTTTCTTTTTCCCTTTTTGGTTGCGAGAAAGAACTACTGGATGGAT
GTTCATGTCCTGCTGAGTTTGCNGTAAGCTCTAAATAGTAGAGGTAGATGATGCGTCTGGTGTTGCTCACTTTGTTTGGT
TTGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis