Browse Element(s) Details


OsAffx.7922.1.S1_at

Description tigr:9638.m03646
TID=OsAffx.7922.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4023011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein
LOC_Os10g40240Os.40626.1.S1_at11/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40240Os.40626.2.S1_x_at7/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7922.1.S1_at--190--9491Chr10:21215812..21216036 (25 bp)
TCTCCGTCCAAAGTGAACAAGCAAT
LOC_Os10g40230
OsAffx.7922.1.S1_at--49--831Chr10:21216041..21216065 (25 bp)
ATGGATTTGAACTCGGTGCCGGGCA
LOC_Os10g40230
OsAffx.7922.1.S1_at--709--3971Chr10:21216060..21216084 (25 bp)
CGGGCAGCGATTCGGATACTTCTAT
LOC_Os10g40230
OsAffx.7922.1.S1_at--294--10491Chr10:21216852..21216876 (25 bp)
TTACAGCCCCTGGACAATCGTGATT
LOC_Os10g40230
OsAffx.7922.1.S1_at--314--3051Chr10:21216867..21216891 (25 bp)
AATCGTGATTCCACTCGATCATCGC
LOC_Os10g40230
OsAffx.7922.1.S1_at--807--8171Chr10:21216908..21216932 (25 bp)
GGAACTGGCCGATGCTTTTATTGCT
LOC_Os10g40230
OsAffx.7922.1.S1_at--1086--10351Chr10:21216923..21216947 (25 bp)
TTTTATTGCTGCCTGCGAACGCTAT
LOC_Os10g40230
OsAffx.7922.1.S1_at--537--5451Chr10:21216939..21216963 (25 bp)
GAACGCTATGCTAAGCCCTTCGCAG
LOC_Os10g40230
OsAffx.7922.1.S1_at--524--311Chr10:21217029..21217053 (25 bp)
ATACCACTACGCATGTATGCCAAGC
LOC_Os10g40230
OsAffx.7922.1.S1_at--313--4751Chr10:21217482..21217502 (21 bp)
GCTGAGTTCATTGTTTTGGGTGCCA
LOC_Os10g40230
OsAffx.7922.1.S1_at--718--10091Chr10:21217521..21217545 (25 bp)
TAGGCATCCCACTTGTGCTCAATAT
LOC_Os10g40230
Target Sequence 
TCTCCGTCCAAAGTGAACAAGCAATCTTGATGGATTTGAACTCGGTGCCGGGCAGCGATTCGGATACTTCTATCCCAAAA
ATTGATGATGACAGTGGGGGAGAATATGTGGGATTACAGCCCCTGGACAATCGTGATTCCACTCGATCATCGCCATATAA
AAATGACCAGGAACTGGCCGATGCTTTTATTGCTGCCTGCGAACGCTATGCTAAGCCCTTCGCAGAGAAGTGGCGATTGC
CTGAAGATTTGGAAAAACGCAAACGACAGGATGAATGCAAGATGTTGAAAATACCACTACGCATGTATGCCAAGCAAAAA
AATATGCCGCCTGCCGAGTTAGAGATTATGGAACTGAAAGAATATACTCTTTTTGATGAACATGGGAAAGTATATGCACA
CTACAACTTTGTGGTGAAAGATTCAGATGGCACTCTTACATTGTTCTTTGCTGAGTTCATTGTTTTGGGTGCCAAGTTTG
GGAGTTGGAACTTAGGCATCCCACTTGTGCTCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis