Browse Element(s) Details


Os.40626.1.S1_at

Description gb:AK122139.1
DB_XREF= gi:37991785
TID=Os.40626.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.1 (B1096D03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136E13, full insert sequence.
FL= gb:AK122139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4024011/11transposase, putative, expressed
LOC_Os05g143207/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g305905/11hAT family dimerisation domain containing protein
LOC_Os05g167305/11hAT family dimerisation domain containing protein
LOC_Os12g351205/11hAT family dimerisation domain containing protein
LOC_Os01g524305/11hAT family dimerisation domain containing protein
LOC_Os12g352204/11hAT family dimerisation domain containing protein
LOC_Os12g352503/11hAT family dimerisation domain containing protein
LOC_Os01g221801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein
LOC_Os10g40240Os.40626.1.S1_at11/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40240Os.40626.2.S1_x_at7/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40626.1.S1_at--134--5438Chr12:21390435..21390459 (25 bp)
GAAGCCTACAGTCTTTGATGCGCAA
LOC_Os12g35250
Os.40626.1.S1_at--174--10279Chr12:21390448..21390472 (25 bp)
TTTGATGCGCAATGCCCCAGTGCAT
LOC_Os12g35250
Os.40626.1.S1_at--775--4331Chr10:21227670..21227694 (25 bp)
CCAGTGCATCTTGAAGCTCCATCAT
LOC_Os10g40240
Os.40626.1.S1_at--180--4799Chr12:21390479..21390503 (25 bp)
GCTCCATCATCCGACTCAGAAGATT
LOC_Os12g35250
Os.40626.1.S1_at--646--6257Chr12:21338419..21338443 (25 bp)
GATGGTATTCCAATGCAGACTTCTG
LOC_Os12g35120
Os.40626.1.S1_at--513--6578Chr12:21379870..21379894 (25 bp)
GATTCTGATAAGTCACCCTCTCCCT
LOC_Os12g35220
Os.40626.1.S1_at--272--9518Chr12:21390567..21390591 (25 bp)
TCTCTGAGACCGATGATTGATGACT
NONE
Os.40626.1.S1_at--952--1199Chr12:21390634..21390658 (25 bp)
AGTATCCACTATCCAGAATTCTTGA
NONE
Os.40626.1.S1_at--773--7415Chr11:17309056..17309080 (25 bp)
GTGTTGTACTGTTGTCTTTATTCCA
NONE
Os.40626.1.S1_at--602--6871Chr10:21227930..21227954 (25 bp)
GTATTCTGTTAACCACTTAGCTTGT
LOC_Os10g40240
Os.40626.1.S1_at--905--6256Chr12:21390727..21390751 (25 bp)
GATGTAATGTACTCCTATGAACCTG
NONE
Target Sequence 
GAAGCCTACAGTCTTTGATGCGCAATGCCCCAGTGCATCTTGAAGCTCCATCATCCGACTCAGAAGATTGTGATGATGGT
ATTCCAATGCAGACTTCTGATTCTGATAAGTCACCCTCTCCCTCTCCCTATGTCTCTGAGACCGATGATTGATGACTAGA
AGAAATGAAGATTGCAATATTGCCTCATATTAGTAATTTAGTATCCACTATCCAGAATTCTTGATGACCTTTGTGTTGTA
CTGTTGTCTTTATTCCAGAATGTTGTACTTTTGTGAAACTGATGTTTCAGTATTCTGTTAACCACTTAGCTTGTGATGTA
ATGTACTCCTATGAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis