Browse Element(s) Details


Os.37700.1.S1_at

Description gb:AK106583.1
DB_XREF= gi:32991792
TID=Os.37700.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0082M15.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E06, full insert sequence.
FL= gb:AK106583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4026010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein
LOC_Os10g40240Os.40626.1.S1_at11/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40240Os.40626.2.S1_x_at7/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37700.1.S1_at--169--6191Chr10:21250435..21250459 (25 bp)
GAGGACTGACCTGACTTACATTGGC
LOC_Os10g40260
Os.37700.1.S1_at--832--5691Chr10:21250447..21250471 (25 bp)
GACTTACATTGGCTCTCTGGATGAA
LOC_Os10g40260
Os.37700.1.S1_at--500--5371Chr10:21250469..21250493 (25 bp)
GAAGACAGCTAACCGGCGCAATTAT
LOC_Os10g40260
Os.37700.1.S1_at--1062--4971Chr10:21250551..21250575 (25 bp)
GCATCGAGCATTCTTCTGTACTTTA
LOC_Os10g40260
Os.37700.1.S1_at--126--1271Chr10:21250616..21250640 (25 bp)
AGATGGACTCAGTTTAACCCTGGAG
LOC_Os10g40260
Os.37700.1.S1_at--204--8971Chr10:21250666..21250690 (25 bp)
TGAAACTATCTCCTTTGTTCTTAAG
LOC_Os10g40260
Os.37700.1.S1_at--751--9771Chr10:21250687..21250711 (25 bp)
TAAGGGTTGCGCTTAGTAGGCTGCA
LOC_Os10g40260
Os.37700.1.S1_at--813--8331Chr10:21250705..21250729 (25 bp)
GGCTGCATTGCAAGGTAGCTCAAAT
LOC_Os10g40260
Os.37700.1.S1_at--309--271Chr10:21250827..21250851 (25 bp)
ATATGAATCAGGGTGGCCTCCTTTT
LOC_Os10g40260
Os.37700.1.S1_at--830--4451Chr10:21250842..21250866 (25 bp)
GCCTCCTTTTGCCATGTATTCATGG
LOC_Os10g40260
Os.37700.1.S1_at--913--10631NONE
TTCCCCTTCGGGTGGTGATATCAAT
NONE
Target Sequence 
GAGGACTGACCTGACTTACATTGGCTCTCTGGATGAAGACAGCTAACCGGCGCAATTATCACCTCCCCCTCATAATTTTG
TTGCAAACCCGTAGGTTGTAAATACATATGTGCAATGCATCGAGCATTCTTCTGTACTTTAAAAACATGGTGTGGAAGAG
TGCTATAGCATTTTCCAATCAAGATGGACTCAGTTTAACCCTGGAGTGGATAGTTCCTAGATGTAATTTATTGAAACTAT
CTCCTTTGTTCTTAAGGGTTGCGCTTAGTAGGCTGCATTGCAAGGTAGCTCAAATTTAGCTTTATGACATAGATAATTAT
ATAGTTAGTCGGAGTTCTCCTTGGGGGNTGTTTGTATACTAGTAAGATTTGGGTCTCCCATAATCCNTTGGTAATATGAA
TCAGGGTGGCCTCCTTTTGCCATGTATTCATGGATCCTACTATTTTTTTTAATGGTGGGTGGAAGTACAACAAGGAGTAC
ATTTTTGTTATTATATGTTTAGGACAAAACCGGGAGAACTTGGGTAAAAGTTCCCCTTCGGGTGGTGATATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis