Browse Element(s) Details


OsAffx.20150.1.S1_at

Description gb:NM_197655.1
DB_XREF= gi:37536669
TID=OsAffx.20150.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4027011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20150.1.S1_at--442--8551Chr10:21256684..21256708 (25 bp)
TGGAGGTCCCCGACTCCTTCATGGC
LOC_Os10g40270
OsAffx.20150.1.S1_at--748--8431Chr10:21256187..21256686 (25 bp)
GGCCATCCTCCCCAAGAGTGGGAAG
LOC_Os10g40270
OsAffx.20150.1.S1_at--128--3931Chr10:21256107..21256131 (25 bp)
CGGAGTACCTGCTGGACTGCCTGGA
LOC_Os10g40270
OsAffx.20150.1.S1_at--297--1991Chr10:21256092..21256116 (25 bp)
ACTGCCTGGACATGTCGTCGGAGCA
LOC_Os10g40270
OsAffx.20150.1.S1_at--602--9351Chr10:21255855..21255879 (25 bp)
TCGACACCAGCAAGATCCAGTTCAA
LOC_Os10g40270
OsAffx.20150.1.S1_at--913--3271Chr10:21255421..21255798 (25 bp)
CAACAAGGATATTGGTCAGGCAATC
LOC_Os10g40270
OsAffx.20150.1.S1_at--384--8591Chr10:21255409..21255433 (25 bp)
TGGTCAGGCAATCCTGGAGAGCTAC
LOC_Os10g40270
OsAffx.20150.1.S1_at--859--9711Chr10:21255384..21255408 (25 bp)
TCAAGGGTGCTGGAAAGCTTGGCTT
LOC_Os10g40270
OsAffx.20150.1.S1_at--80--2351Chr10:21255371..21255395 (25 bp)
AAAGCTTGGCTTTCAACATCGTATC
LOC_Os10g40270
OsAffx.20150.1.S1_at--195--8311Chr10:21255364..21255388 (25 bp)
GGCTTTCAACATCGTATCATGGATC
LOC_Os10g40270
OsAffx.20150.1.S1_at--624--9631Chr10:21255348..21255372 (25 bp)
TCATGGATCGATGATGTCCTTTTTG
LOC_Os10g40270
Target Sequence 
TGGAGGTCCCCGACTCCTTCATGGCCATCCTCCCCAAGAGTGGGAAGGCGAGCGTGGGGGACGGGGTGTACAGGGCGATG
CTGGGGGCGGAGAAGTTCTCGCCGGAGTACCTGCTGGACTGCCTGGACATGTCGTCGGAGCACGAGGCGCTGGCGATGGC
GGACAGGGTGGAGGCGGCGATGTACGTGTGGCGGCGCAAGGCGGGCGCCAGCCACGGGAGGTCGCGGTGGGGCGCCGTCA
AGGAGCTCGTCGCCGACGACGAGGAGCAGGACAAGAACGTGATGCTGGCAGGCCGGGCGGAGAGCCTCCTCCTCTGCCTC
AAGCACAGGTTCCCCGGCTTGTCCCAGACCACCCTCGACACCAGCAAGATCCAGTTCAACAAGGATATTGGTCAGGCAAT
CCTGGAGAGCTACTCAAGGGTGCTGGAAAGCTTGGCTTTCAACATCGTATCATGGATCGATGATGTCCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis