Browse Element(s) Details


OsAffx.30733.1.S1_x_at

Description tigr:9638.m03653
TID=OsAffx.30733.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4030011/11hypothetical protein
LOC_Os05g040801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30733.1.S1_x_at--710--7232Chr10:21270674..21270698 (25 bp)
GTCGCCTCTTCTCTCTCAGTTTTCT
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--578--9631Chr10:21270689..21270713 (25 bp)
TCAGTTTTCTCCTCGTCTAGGTGGA
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--666--1211Chr10:21270691..21270715 (25 bp)
AGTTTTCTCCTCGTCTAGGTGGACA
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--856--10291Chr10:21270694..21270718 (25 bp)
TTTCTCCTCGTCTAGGTGGACAGGC
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--491--3791Chr10:21270700..21270724 (25 bp)
CTCGTCTAGGTGGACAGGCCGACCG
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--868--8151Chr10:21270763..21270787 (25 bp)
GGAAGAGGTTCAGTGGCCGGTGGCC
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--379--2675Chr10:21270962..21270986 (25 bp)
AAGCGGCGGTCGACGTCGACCATCT
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--45--1911Chr10:21270974..21270998 (25 bp)
ACGTCGACCATCTGGAGGGCGGAGA
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--888--3951Chr10:21271032..21271056 (25 bp)
CGGATGGCGCCGATGTGGAACGGGA
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--775--6112Chr10:21271063..21271087 (25 bp)
GAGTGAGGCCGCCATCACCGTCGTC
LOC_Os10g40300
OsAffx.30733.1.S1_x_at--577--391Chr10:21271076..21271100 (25 bp)
ATCACCGTCGTCGTCCATGGCGTGG
LOC_Os10g40300
Target Sequence 
GTCGCCTCTTCTCTCTCAGTTTTCTCCTCGTCTAGGTGGACAGGCCGACCGGCGGGTTGGGGAGGAAGCCAACGAGGCGA
GGCAGGAGAGGAAGAGGTTCAGTGGCCGGTGGCCGGCGACCGGCGATGTGGCAGCCGCACCGGCCTACCGGAGGACCGGG
CAAGCGGTGGCCGGTGGGCGAAGCGGGTGACGGCGAGGGCCGGAGCGGCCGGCCGACGGTGGGCAAGCGCGCTGCGGGAG
AGGAAGGGGCTACGGCGGCAGGGGCGCGGGAAGTCAGGCCGCACCGGCAAGCGGCGGTCGACGTCGACCATCTGGAGGGC
GGAGAGAGGAGAAGAGCGGGGAGAGGGGAGAGCTGAGGCGGATGGCGCCGATGTGGAACGGGATGGGGAGAGTGAGGCCG
CCATCACCGTCGTCGTCCATGGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30733.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis