Browse Element(s) Details


OsAffx.7920.1.S1_at

Description tigr:9638.m03658
TID=OsAffx.7920.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4035011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7920.1.S1_at--1--9351Chr10:21285882..21285906 (25 bp)
TCGCTGTCGGCACAGCCGTCGGTAT
LOC_Os10g40350
OsAffx.7920.1.S1_at--164--7191Chr10:21285887..21285911 (25 bp)
GTCGGCACAGCCGTCGGTATCGAGT
LOC_Os10g40350
OsAffx.7920.1.S1_at--505--2151Chr10:21285893..21285917 (25 bp)
ACAGCCGTCGGTATCGAGTGCGTGC
LOC_Os10g40350
OsAffx.7920.1.S1_at--576--7191Chr10:21285899..21285923 (25 bp)
GTCGGTATCGAGTGCGTGCGCGTGG
LOC_Os10g40350
OsAffx.7920.1.S1_at--285--8331Chr10:21285955..21285979 (25 bp)
GGCTGCCGCCGTTGGCTGGCTGCAC
LOC_Os10g40350
OsAffx.7920.1.S1_at--558--7791Chr10:21285981..21286005 (25 bp)
GGTCGCCCTCCGAGGAGACACAATA
LOC_Os10g40350
OsAffx.7920.1.S1_at--990--6171Chr10:21285992..21286016 (25 bp)
GAGGAGACACAATACGACAGAGAAC
LOC_Os10g40350
OsAffx.7920.1.S1_at--629--5651Chr10:21286007..21286103 (25 bp)
GACAGAGAACTCAGGGATTCATATC
LOC_Os10g40350
OsAffx.7920.1.S1_at--366--1071Chr10:21286091..21286115 (25 bp)
AGGGATTCATATCCTGCTCGTCGTA
LOC_Os10g40350
OsAffx.7920.1.S1_at--647--7931Chr10:21286093..21286117 (25 bp)
GGATTCATATCCTGCTCGTCGTATC
LOC_Os10g40350
OsAffx.7920.1.S1_at--443--10151Chr10:21286100..21286124 (25 bp)
TATCCTGCTCGTCGTATCCCAGATT
LOC_Os10g40350
Target Sequence 
TCGCTGTCGGCACAGCCGTCGGTATCGAGTGCGTGCGCGTGGGGCGCGCGCTGCACTGGCCGCGGTCCCGGCCGGCTGCC
GCCGTTGGCTGGCTGCACCGGTCGCCCTCCGAGGAGACACAATACGACAGAGAACTCAGGGATTCATATCCTGCTCGTCG
TATCCCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis