Browse Element(s) Details


Os.46822.2.S1_x_at

Description gb:NM_197656.1
DB_XREF= gi:37536671
TID=Os.46822.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J15.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4028011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46822.2.S1_x_at--87--10671Chr10:21263572..21263596 (25 bp)
TTCCTCGTGGTGGTCGCGGACAGGC
LOC_Os10g40280
Os.46822.2.S1_x_at--568--9451Chr10:21263696..21263787 (25 bp)
TCGGCGCCACGGTCGCAGGGACACG
LOC_Os10g40280
Os.46822.2.S1_x_at--193--6711Chr10:21263802..21263826 (25 bp)
GTTCGCTCGAGCTGAGGCGGCACTA
LOC_Os10g40280
Os.46822.2.S1_x_at--61--3871Chr10:21263813..21263837 (25 bp)
CTGAGGCGGCACTACCTCGTGGAGT
LOC_Os10g40280
Os.46822.2.S1_x_at--806--7231Chr10:21263885..21263909 (25 bp)
GTCGCGCTCTACAAGCTCAACTGGG
LOC_Os10g40280
Os.46822.2.S1_x_at--869--4811Chr10:21263890..21263914 (25 bp)
GCTCTACAAGCTCAACTGGGACGCG
LOC_Os10g40280
Os.46822.2.S1_x_at--901--2211Chr10:21263895..21263919 (25 bp)
ACAAGCTCAACTGGGACGCGAGGGC
LOC_Os10g40280
Os.46822.2.S1_x_at--1152--891Chr10:21264084..21264108 (25 bp)
AGGCGTGGTTCTGGTCGGAGTCGAG
LOC_Os10g40280
Os.46822.2.S1_x_at--220--4171Chr10:21264120..21264144 (25 bp)
CGCCGGGTGATCTGCTGGTGCTGAA
LOC_Os10g40280
Os.46822.2.S1_x_at--433--7311Chr10:21264137..21264161 (25 bp)
GTGCTGAAGAAGACGGTGCCGCACC
LOC_Os10g40280
Os.46822.2.S1_x_at--9--5751Chr10:21264182..21264206 (25 bp)
GACGGCGACTCGTTCTGGTTCTTCC
LOC_Os10g40280
Target Sequence 
TTCCTCGTGGTGGTCGCGGACAGGCTCCTCGCCTTCTGCCGCCCCGGCGCCGACTTCCAGGGGTGGGAGACGCTGCGCGC
GCCGGGGTTCCGCCACCACGCGGCCCTCAGCGACGTCGTCGCCGTCGGCGCCACGGTCGCAGGGACACGGGGTTCGCGCT
CCCGTTCGCTCGAGCTGAGGCGGCACTACCTCGTGGAGTCGCTCGGCCACGTCCTCCTCGTGCTCTCGGACGAGCGCCAC
AACCGCGTCGCGCTCTACAAGCTCAACTGGGACGCGAGGGCGTGGCTGCCGATCGCCGCCTGCCCCGGCGAGCGCGTGCT
GCTGCTCGGCCGCGGGTGCTCGGCGGCCGTCCCGCCTTCCTCCGCGGCCGGCCGCGCCCCGGGGACCGTCCTGTTCGCGC
ACCAGCCGTCGACGCTGCCCGACGTGGACGTCGCCGCCCGTGGCCAGGCGTGGTTCTGGTCGGAGTCGAGGGTGGGCGCG
GCGCCGGGTGATCTGCTGGTGCTGAAGAAGACGGTGCCGCACCGCCATGGCGAGTTCCCCGCCGACGGCGACTCGTTCTG
GTTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46822.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis