Browse Element(s) Details


OsAffx.30734.1.S1_at

Description tigr:9638.m03654
TID=OsAffx.30734.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4032411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30734.1.S1_at--167--4711Chr10:21271955..21271979 (25 bp)
GCTGGCAGGGAGAGGCGTCCATCGA
LOC_Os10g40324
OsAffx.30734.1.S1_at--307--2591Chr10:21272005..21272029 (25 bp)
AACGATGCACCCTGGTGCACGCCGA
LOC_Os10g40324
OsAffx.30734.1.S1_at--948--6311Chr10:21272008..21272032 (25 bp)
GATGCACCCTGGTGCACGCCGAATC
LOC_Os10g40324
OsAffx.30734.1.S1_at--55--7911Chr10:21272097..21272121 (25 bp)
GGTTGCCCTAGAGCTTGCCGAGGAT
LOC_Os10g40324
OsAffx.30734.1.S1_at--873--10692Chr10:21272099..21272123 (25 bp)
TTGCCCTAGAGCTTGCCGAGGATGG
LOC_Os10g40324
OsAffx.30734.1.S1_at--991--3611Chr10:21272110..21272134 (25 bp)
CTTGCCGAGGATGGCCTTAAGGAAC
LOC_Os10g40324
OsAffx.30734.1.S1_at--83--6232Chr10:21272119..21272143 (25 bp)
GATGGCCTTAAGGAACTCGCGGTCT
LOC_Os10g40324
OsAffx.30734.1.S1_at--219--872Chr10:21272120..21272144 (25 bp)
ATGGCCTTAAGGAACTCGCGGTCTC
LOC_Os10g40324
OsAffx.30734.1.S1_at--659--8392Chr10:21272122..21272146 (25 bp)
GGCCTTAAGGAACTCGCGGTCTCGC
LOC_Os10g40324
OsAffx.30734.1.S1_at--981--4292Chr10:21272124..21272148 (25 bp)
CCTTAAGGAACTCGCGGTCTCGCCG
LOC_Os10g40324
OsAffx.30734.1.S1_at--64--3971Chr10:21272150..21272174 (25 bp)
CGGTCGATACCTTGGGGTTGATGAA
LOC_Os10g40324
Target Sequence 
GCTGGCAGGGAGAGGCGTCCATCGAGAGAGCGGTAGGGGCCTCCTCGTTCAACGATGCACCCTGGTGCACGCCGAATCCC
CCCGAGCTGCGGCGCAGTGGTGACGGTGGGGCGAAGAAGGCGGCGGCGGTGGAAGACGTCGGGGTTGCCCTAGAGCTTGC
CGAGGATGGCCTTAAGGAACTCGCGGTCTCGCCGGCGGTCGATACCTTGGGGTTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis