Browse Element(s) Details


Os.46515.1.S1_at

Description gb:AK069527.1
DB_XREF= gi:32979551
TID=Os.46515.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sucrose-phosphate synthase (OSJNBa0015J15.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021N13, full insert sequence.
FL= gb:AK069527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g403241/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46515.1.S1_at--494--1492Chr10:21283238..21283262 (25 bp)
AGCACCGCCACCTTGGATAGGTCGA
LOC_Os10g40324
Os.46515.1.S1_at--624--8571Chr06:25741413..25741437 (25 bp)
TGGATAGGTCGATGCCCCACTGTAT
NONE
Os.46515.1.S1_at--601--4172Chr11:7251816..7251840 (25 bp)
CCCACTGTATCGACAGGTACCTGAA
NONE
Os.46515.1.S1_at--609--3852Chr10:21283287..21283310 (24 bp)
CTGAAAGATTAATGCGTCGAACGGT
NONE
Os.46515.1.S1_at--467--732Chr10:21283422..21283446 (25 bp)
ATGTTGAGGCACATGCACGCGCGCG
NONE
Os.46515.1.S1_at--748--4552Chr11:7251970..7251989 (20 bp)
GCGCGCGTGTAGACGAGGTTTCTTT
NONE
Os.46515.1.S1_at--1050--1011Chr06:25741210..25741234 (25 bp)
AGGTTTCTTTGGAAGCCGCGCATCC
NONE
Os.46515.1.S1_at--740--552Chr10:21283476..21283500 (25 bp)
ATCCGCAGCACCTGCTTGATCCAAT
NONE
Os.46515.1.S1_at--887--6352Chr10:21283493..21283517 (25 bp)
GATCCAATCGATTTCTTCAAGAAGT
NONE
Os.46515.1.S1_at--196--372Chr10:21283524..21283548 (25 bp)
ATCAAATGGTGTTCGTGGCAACGGT
NONE
Os.46515.1.S1_at--1117--7772Chr10:21283549..21283573 (25 bp)
GGTGCTCTGCTTAACTTGGATGTGT
NONE
Target Sequence 
AGCACCGCCACCTTGGATAGGTCGATGCCCCACTGTATCGACAGGTACCTGAAAGATTAATGCGTCGAACGGTTAGAGAC
GACGAGATGGTGATGAGGTGGTGGTGGTGGTGGACTGGTGGTGATGGTGGCGTCGCTGGCGGCGGCGTCTCACCTGATCG
CGCATGGCCGGGAGAGAGGGATGATGTTGAGGCACATGCACGCGCGCGTGTAGACGAGGTTTCTTTGGAAGCCGCGCATC
CGCAGCACCTGCTTGATCCAATCGATTTCTTCAAGAAGTGTTGTCATCAAATGGTGTTCGTGGCAACGGTGGTGCTCTGC
TTAACTTGGATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis