Browse Element(s) Details


Os.2881.1.S1_at

Description gb:AK121010.1
DB_XREF= gi:37990633
TID=Os.2881.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline oxidase (OSJNBa0015J15.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047B13, full insert sequence.
FL= gb:AK121010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4036010/11Proline dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006537biological_processglutamate biosynthesis
GO:0006562biological_processproline catabolism
GO:0005739cellular_componentmitochondrion
GO:0004657molecular_functionproline dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2881.1.S1_at--533--3351Chr10:21290247..21290271 (25 bp)
CACGCACAACGTCGAGTCCGGGCAG
LOC_Os10g40360
Os.2881.1.S1_at--932--4231Chr10:21290384..21290408 (25 bp)
CCGGGTTCCAGGTGAGCAAGTACCT
LOC_Os10g40360
Os.2881.1.S1_at--1027--2831Chr10:21290401..21290425 (25 bp)
AAGTACCTGCCGTACGGTCCAGTGG
LOC_Os10g40360
Os.2881.1.S1_at--383--7271Chr10:21290417..21290441 (25 bp)
GTCCAGTGGAGCAGATCATCCCGTA
LOC_Os10g40360
Os.2881.1.S1_at--237--551Chr10:21290434..21290458 (25 bp)
ATCCCGTACCTCATCAGACGAGCAG
LOC_Os10g40360
Os.2881.1.S1_at--681--10831Chr10:21290647..21290671 (25 bp)
TTGTGAGGAGGTTCAAGGCTGCAAT
LOC_Os10g40360
Os.2881.1.S1_at--223--3851Chr10:21290665..21290689 (25 bp)
CTGCAATGCTGGGACGTGAGTGAAA
LOC_Os10g40360
Os.2881.1.S1_at--716--5031Chr10:21290698..21290722 (25 bp)
GCAGAAGACTGAGGCTGCCTTATCT
LOC_Os10g40360
Os.2881.1.S1_at--106--7051Chr10:21290786..21290810 (25 bp)
GTAAATACTCCTATCATTCTGAAAA
LOC_Os10g40360
Os.2881.1.S1_at--654--2591Chr10:21290866..21290890 (25 bp)
AACGAAATGATGTGCTCGTGCTGCA
LOC_Os10g40360
Os.2881.1.S1_at--173--3051NONE
AATCGAGAGGCTTCCATTCCGTAAA
NONE
Target Sequence 
CACGCACAACGTCGAGTCCGGGCAGCTCGCCGCGGCGAGGGCGCTGGAGCTCGGCATCGGCGGCGGCGGCGACCGCGGCC
TGCAGTTCGCGCAGCTGATGGGCATGGCGGATGGCCTCTCGCTCGGCCTCCGCAACGCCGGGTTCCAGGTGAGCAAGTAC
CTGCCGTACGGTCCAGTGGAGCAGATCATCCCGTACCTCATCAGACGAGCAGAGGAGAACAGGGGATTGCTCTCGTCTTC
CTCCTTCGACAGACAGCTGCTCCGGNANGAGCTTGTGAGGAGGTTCAAGGCTGCAATGCTGGGACGTGAGTGAAAGTGAG
GTGGCAGAAGACTGAGGCTGCCTTATCTGNTTGTGTTGCTNCTGGGACTTGGGAGTGAAGCGNTCGAGTCATGAGTAGAA
GTCGTAAACTTGTAAATACTCCTATCATTCTGAAAAAAGAACAGACATTGGTGTATCAATCGATNGTGATCTCTGAATAA
ACTGAATCATCAACGAAATGATGTGCTCGTGCTGCANTGATCTTATCTTGAATCGAGAGGCTTCCATTCCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis