Browse Element(s) Details


Os.31837.1.A1_at

Description gb:AK106659.1
DB_XREF= gi:32991868
TID=Os.31837.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J15.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G10, full insert sequence.
FL= gb:AK106659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4037011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31837.1.A1_at--1013--6551Chr10:21294492..21294516 (25 bp)
GGGCGCTACCTGTGTAATGTTAAAA
LOC_Os10g40370
Os.31837.1.A1_at--171--2511Chr10:21294833..21294857 (25 bp)
AACATTTTACAGTTCGTTCCATGTA
LOC_Os10g40370
Os.31837.1.A1_at--47--9391Chr10:21294846..21294870 (25 bp)
TCGTTCCATGTAAACCTTATACCTT
LOC_Os10g40370
Os.31837.1.A1_at--1011--10071Chr10:21294874..21294898 (25 bp)
TAGGGCTAATAGTTTACAATCAATT
LOC_Os10g40370
Os.31837.1.A1_at--1128--2991Chr10:21294909..21294933 (25 bp)
AATGATGATCTTTACACACTTCTGT
LOC_Os10g40370
Os.31837.1.A1_at--519--6551Chr10:21294953..21294977 (25 bp)
GATTATAGCATACCATGTTCCTTGT
LOC_Os10g40370
Os.31837.1.A1_at--24--4971Chr10:21294960..21294984 (25 bp)
GCATACCATGTTCCTTGTGTACTTA
LOC_Os10g40370
Os.31837.1.A1_at--893--31Chr10:21294987..21295011 (25 bp)
ATTGATTTAACTTCAGAGCCTATGA
LOC_Os10g40370
Os.31837.1.A1_at--996--1371Chr10:21295001..21295025 (25 bp)
AGAGCCTATGAATTTAACTTGTAAG
LOC_Os10g40370
Os.31837.1.A1_at--200--6471Chr10:21295029..21295053 (25 bp)
GATAAGTCACTTTTCCAATCTGTAC
LOC_Os10g40370
Os.31837.1.A1_at--537--4771Chr10:21295042..21295066 (25 bp)
TCCAATCTGTACACTTGTTGGGCCA
LOC_Os10g40370
Target Sequence 
GGGCGCTACCTGTGTAATGTTAAAATGGTGGCTTGGAGGGGCAGGACAATGCTCAGGGATTTCTCCAAGGTGAGGGTGCA
GGAGACTGAAGAAAAACAGGGTTTGGGAATTGGTTATNGGGTTGATGCACTGCAACAGAAGCTGCATTTCTCGATTCCGC
TGGTGAGGGAAGGGGATGGGTCGATAGAGGTTGTTGCAGACAACAATGGATGGAGCTTCATGGGTGAGGATGTGGTTGCG
CGATCAGGGATATCGAGGAAGAGTAGGATGTAGAAGGCGAGGGAAGCCGAAACCTCTCTCAAGCTAGAAGGATGATTGGC
TCTCCTCAGTGTTTCATAGGTAACATTTTACAGTTCGTTCCATGTAAACCTTATACCTTAAATAGGGCTAATAGTTTACA
ATCAATTTAGTAGGTTTAATGATGATCTTTACACACTTCTGTATAAGCAACAAAAGTATTAGATTATAGCATACCATGTT
CCTTGTGTACTTATTATTGATTTAACTTCAGAGCCTATGAATTTAACTTGTAAGCAAGATAAGTCACTTTTCCAATCTGT
ACACTTGTTGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31837.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis