Browse Element(s) Details


Os.46878.2.S1_x_at

Description gb:NM_197667.1
DB_XREF= gi:37536693
TID=Os.46878.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46878 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Scl1 protein (OSJNBa0015J15.19), mRNA.
PROD=putative Scl1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4039011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46878.2.S1_x_at--95--5911Chr10:21306491..21306515 (25 bp)
GAGCTCGGCGTCTTCTTCCACTTCA
LOC_Os10g40390
Os.46878.2.S1_x_at--184--9431Chr10:21306340..21306364 (25 bp)
TCGTGAAGCGCCTCGGCGCCAAGGT
LOC_Os10g40390
Os.46878.2.S1_x_at--780--4153Chr03:34998783..34998806 (24 bp)
CGCCAAGGTGGTGGTCTCCGTCGAC
NONE
Os.46878.2.S1_x_at--1152--8593Chr03:34998793..34998817 (25 bp)
TGGTCTCCGTCGACCGCGGCTGCGA
NONE
Os.46878.2.S1_x_at--1132--9371Chr10:21306226..21306250 (25 bp)
TCGAGTCCATCGACGCCGTGGGCAC
LOC_Os10g40390
Os.46878.2.S1_x_at--1064--5631Chr10:21306194..21306218 (25 bp)
GACACCGCGTCCAAGATCGAGCGGT
LOC_Os10g40390
Os.46878.2.S1_x_at--230--7271Chr10:21306186..21306210 (25 bp)
GTCCAAGATCGAGCGGTACCTCATC
LOC_Os10g40390
Os.46878.2.S1_x_at--258--4331Chr10:21306154..21306178 (25 bp)
CCATCGAGCAGTGCGTCGTGGCCAG
LOC_Os10g40390
Os.46878.2.S1_x_at--8--7331Chr10:21306050..21306074 (25 bp)
GTGCAGGCGACGACGTTCGCGGAGT
LOC_Os10g40390
Os.46878.2.S1_x_at--1082--10631Chr10:21306035..21306059 (25 bp)
TTCGCGGAGTCGCAGGCGGAGTCGC
LOC_Os10g40390
Os.46878.2.S1_x_at--75--9351Chr10:21306014..21306038 (25 bp)
TCGCTGCTGAGCAAGGTGCACGTCA
LOC_Os10g40390
Target Sequence 
GAGCTCGGCGTCTTCTTCCACTTCACCGTCTTCAACATCGACACCCTGGACCCCGCCGAGCTCCTCGCCAACGCCACCGC
GGGCGACGCCGTGGCCGTGCACCTCCCCGTCGGCCCCGCCCACGCCGCCGCGACGCCGGCCGTGCTCCGCCTCGTGAAGC
GCCTCGGCGCCAAGGTGGTGGTCTCCGTCGACCGCGGCTGCGACCGCTCCGACCTCCCCTTCGCGGCGCACCTCTTCCAC
TCCTTCCACTCCGCCGTCTACCTCCTCGAGTCCATCGACGCCGTGGGCACGGACCCGGACACCGCGTCCAAGATCGAGCG
GTACCTCATCCACCCCGCCATCGAGCAGTGCGTCGTGGCCAGCCACCGCGCCGCCTCCGCCATGGACAAGGCGCCGCCGC
CGCCGTGGCGCGCGGCGTTCGCGGCGGCGGGGTTCGCGCCGGTGCAGGCGACGACGTTCGCGGAGTCGCAGGCGGAGTCG
CTGCTGAGCAAGGTGCACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46878.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis