Browse Element(s) Details


Os.4194.1.S1_at

Description gb:L27209.1
DB_XREF= gi:786129
GEN=RCc2
TID=Os.4194.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.16), mRNA
DEF=Oryza sativa root-specific RCc2 mRNA, complete cds.
FL= gb:L27209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4043011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4194.1.S1_at--287--7791Chr10:21328975..21328999 (25 bp)
GGTCGTCATACCGACGCCGACGGTG
LOC_Os10g40430
Os.4194.1.S1_at--1157--4571Chr10:21328836..21328860 (25 bp)
GCGCTCGGCGTGAACGTCGGCCATG
LOC_Os10g40430
Os.4194.1.S1_at--850--5571Chr10:21328625..21328649 (25 bp)
GAAAGTGCTCAAACCATTTGCGCAA
LOC_Os10g40430
Os.4194.1.S1_at--929--7291Chr10:21328621..21328645 (25 bp)
GTGCTCAAACCATTTGCGCAAAATT
LOC_Os10g40430
Os.4194.1.S1_at--687--6071Chr10:21328570..21328594 (25 bp)
GAGTTTGTTTTCATGCAATGGCCAT
LOC_Os10g40430
Os.4194.1.S1_at--1016--10251Chr10:21328567..21328591 (25 bp)
TTTGTTTTCATGCAATGGCCATTGG
LOC_Os10g40430
Os.4194.1.S1_at--1095--4431Chr10:21328550..21328574 (25 bp)
GCCATTGGTAAGTTGCATGATGCAT
LOC_Os10g40430
Os.4194.1.S1_at--645--711Chr10:21328534..21328558 (25 bp)
ATGATGCATGAGTAAGCCGGCCTGA
LOC_Os10g40430
Os.4194.1.S1_at--763--6091Chr10:21328525..21328549 (25 bp)
GAGTAAGCCGGCCTGAATAAGCTAT
LOC_Os10g40430
Os.4194.1.S1_at--264--4251Chr10:21328518..21328542 (25 bp)
CCGGCCTGAATAAGCTATTATCCCC
LOC_Os10g40430
Os.4194.1.S1_at--246--3071Chr10:21328510..21328534 (25 bp)
AATAAGCTATTATCCCCCCTTGTGT
LOC_Os10g40430
Target Sequence 
GGTCGTCATACCGACGCCGACGGTGGTGGTGCCACTGCCGTCGTTCGGCGGCGCCCATGGCGGCTACGGCGGCTACGGCC
ATGGCCGCTGCCCGATCGACGCGCTGAAGCTGCGGGTGTGCGCCAACGTGCTCAACGGCGCGCTCGGCGTGAACGTCGGC
CATGGCCCCTACGACTGCTGCCNNCTGCTCGCCGGCCTCGCCGACGCCGACGCCGCCGTCTGCCTCTGCACCGCCGTGAA
GGCCAACGTGCTCGGCGTCAACCTCAACGTCCCCGTCGAGCTCAAGCTCATCCTCAACAAGTGCGGCAAGACCTGCCCCT
CCGACTTCACCTGCTAATTAATTGAGCATGGAAAGTGCTCAAACCATTTGCGCAAAATTAATGCATATTTATATTATATT
TAATTGAGTTTGTTTTCATGCAATGGCCATTGGTAAGTTGCATGATGCATGAGTAAGCCGGCCTGAATAAGCTATTATCC
CCCCTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis