Browse Element(s) Details


Os.25142.1.A1_at

Description gb:AK121815.1
DB_XREF= gi:37991438
TID=Os.25142.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J15.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098H05, full insert sequence.
FL= gb:AK121815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4049011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40520Os.22427.1.S1_at11/1110+21364191..21364817Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25142.1.A1_at--581--3111Chr10:21351073..21351097 (25 bp)
AATTTGATCTTAGAGGCCTCCGGGC
LOC_Os10g40490
Os.25142.1.A1_at--1051--5431Chr10:21351151..21351175 (25 bp)
GAACCGGAGACGTTGCTCATACAAA
LOC_Os10g40490
Os.25142.1.A1_at--80--431Chr10:21351201..21351225 (25 bp)
ATCATCAGTGATGCAGTCGCCTTTC
LOC_Os10g40490
Os.25142.1.A1_at--599--9331Chr10:21351217..21351241 (25 bp)
TCGCCTTTCGATGAAGACTGCTGCA
LOC_Os10g40490
Os.25142.1.A1_at--691--471Chr10:21351256..21351398 (25 bp)
ATCTGCCCAATCCTTCAGGAGGTTA
LOC_Os10g40490
Os.25142.1.A1_at--996--691Chr10:21351398..21351422 (25 bp)
ATGAGGGAGCCTTGCATTGCATCAG
LOC_Os10g40490
Os.25142.1.A1_at--498--7931Chr10:21351425..21351449 (25 bp)
GGATTCACCTACGAAACCGATGCGA
LOC_Os10g40490
Os.25142.1.A1_at--595--4051Chr10:21351442..21351466 (25 bp)
CGATGCGATCAGATCCTGGCTTGAT
LOC_Os10g40490
Os.25142.1.A1_at--1063--6131Chr10:21351475..21351499 (25 bp)
GAGGGTATCTCCCATTACAGGACAG
LOC_Os10g40490
Os.25142.1.A1_at--873--951Chr10:21351493..21351517 (25 bp)
AGGACAGCCGATTGTGCACCAGCAG
LOC_Os10g40490
Os.25142.1.A1_at--27--1491Chr10:21351513..21351537 (25 bp)
AGCAGCTAATTCCAAACCTTTCTCT
LOC_Os10g40490
Target Sequence 
AATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCATGATGAGAACTGTGTCAGAGA
ACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCATTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAG
ACTGCTGCATCCCTTCATACTTNATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTC
ACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATTACAGGACAGCCGATTGTGCA
CCAGCAGCTAATTCCAAACCTTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25142.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis