Browse Element(s) Details


Os.46052.1.S1_at

Description gb:AK102086.1
DB_XREF= gi:32987295
TID=Os.46052.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082M21, full insert sequence.
FL= gb:AK102086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4044011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46052.1.S1_at--1100--9711Chr10:21333109..21333133 (25 bp)
TCAAGGCCAACGTTCTTGGGATCAT
LOC_Os10g40440
Os.46052.1.S1_at--1094--6731Chr10:21333098..21333122 (25 bp)
GTTCTTGGGATCATCAACCTCAACA
LOC_Os10g40440
Os.46052.1.S1_at--541--4871Chr10:21332987..21333011 (25 bp)
GCTTGCATACATGGACAAATGCGCA
LOC_Os10g40440
Os.46052.1.S1_at--842--2271Chr10:21332971..21332995 (25 bp)
AAATGCGCAGAAACAATATTCGTAA
LOC_Os10g40440
Os.46052.1.S1_at--173--3151Chr10:21332948..21332972 (25 bp)
AATTAAGCTTATCTATTTCATTCGA
LOC_Os10g40440
Os.46052.1.S1_at--1089--10191Chr10:21332935..21332959 (25 bp)
TATTTCATTCGATGATGGCTAGCTA
LOC_Os10g40440
Os.46052.1.S1_at--542--4991Chr10:21332903..21332927 (25 bp)
GCATGCATGCCGTGGCTATGTCATC
LOC_Os10g40440
Os.46052.1.S1_at--608--8671Chr10:21332868..21332892 (25 bp)
TGTGTTGTTGTTTTACTCTGTTCCC
LOC_Os10g40440
Os.46052.1.S1_at--208--6811Chr10:21332859..21332883 (25 bp)
GTTTTACTCTGTTCCCTTATATCAA
LOC_Os10g40440
Os.46052.1.S1_at--677--9451Chr10:21332852..21332876 (25 bp)
TCTGTTCCCTTATATCAATTTTGTA
LOC_Os10g40440
Os.46052.1.S1_at--391--2431Chr10:21332783..21332807 (25 bp)
AAAACCGATTTGTGCTTCATCAATG
LOC_Os10g40440
Target Sequence 
TCAAGGCCAACGTTCTTGGGATCATCAACCTCAACATCCCCGTCGATCTCAGCCTCATCCTCAACAACTGCGGCAAGATC
TGTCCCTCCGATTTCACCTGCTAATTAAGCTCAGCTGCTCAAGCTTGCATACATGGACAAATGCGCAGAAACAATATTCG
TAATTAAGCTTATCTATTTCATTCGATGATGGCTAGCTAGCTAGCTGCATGCATGCCGTGGCTATGTCATCCAGAATAAG
ATGTGTTGTTGTTTTACTCTGTTCCCTTATATCAATTTTGTATTGTGTTGTATTGTATTCGAATTGAATGAGTTAACGAG
TTTTGTAAAACCGATTTGTGCTTCATCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis