Browse Element(s) Details


OsAffx.20147.1.S1_x_at

Description gb:NM_197673.1
DB_XREF= gi:37536705
TID=OsAffx.20147.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4045011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20147.1.S1_x_at--754--2171Chr10:21335713..21335737 (25 bp)
ACACTGAAGAGGAACCCACGGCGGA
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--1099--8071Chr10:21335735..21335759 (25 bp)
GGAGCCCCGAGTACATGGAGAGCCT
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--573--1671Chr10:21335737..21335761 (25 bp)
AGCCCCGAGTACATGGAGAGCCTCT
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--1043--2111Chr10:21335747..21335771 (25 bp)
ACATGGAGAGCCTCTCGCCGGAGGA
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--796--5891Chr10:21335797..21335821 (25 bp)
GAGCTGGGCGACGAGTTCGAGGCGT
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--8--10691Chr10:21335821..21335845 (25 bp)
TTCCAGGAGGAGGTTCGCCGCGCCG
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--983--4071Chr10:21335847..21335871 (25 bp)
CGAGAACGACGGCTGCTACATGGTC
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--937--9871Chr10:21335863..21335887 (25 bp)
TACATGGTCGGCGAGAGCTACTTCG
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--501--4611Chr10:21335873..21335897 (25 bp)
GCGAGAGCTACTTCGCTGAGACGGC
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--503--4851Chr10:21335879..21335903 (25 bp)
GCTACTTCGCTGAGACGGCGGCGAT
LOC_Os10g40450
OsAffx.20147.1.S1_x_at--1070--1271Chr10:21335933..21335957 (25 bp)
AGATCGACATGAGCCGTGTCATCTT
LOC_Os10g40450
Target Sequence 
ACACTGAAGAGGAACCCACGGCGGAGCCCCGAGTACATGGAGAGCCTCTCGCCGGAGGAGCGCGAGGGGGAAGTGGAGGA
CGCCGAGCTGGGCGACGAGTTCGAGGCGTTCCAGGAGGAGGTTCGCCGCGCCGTCGAGAACGACGGCTGCTACATGGTCG
GCGAGAGCTACTTCGCTGAGACGGCGGCGATCCAGGCGGCGATGGAGGAGGAGTGGACCAAGATCGACATGAGCCGTGTC
ATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20147.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis