Browse Element(s) Details


Os.2885.1.S1_at

Description gb:AK068963.1
DB_XREF= gi:32978987
TID=Os.2885.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative enoyl-CoA-hydratase (OSJNBa0015J15.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002D14, full insert sequence.
FL= gb:AK099250.1 gb:AK068963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4054011/11Enoyl-CoA hydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40520Os.22427.1.S1_at11/1110+21364191..21364817Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os10g40559OsAffx.30736.1.S1_x_at11/1110+21392120..21393511Exostosin family protein, expressed
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2885.1.S1_at--585--911Chr10:21371917..21371941 (25 bp)
AGGCTTCTCCTCTTGCGTTGAAAGT
LOC_Os10g40540
Os.2885.1.S1_at--48--4671Chr10:21371753..21371777 (25 bp)
GCGTGAATACCGCATGTCTATCAAT
LOC_Os10g40540
Os.2885.1.S1_at--225--6371Chr10:21371380..21371404 (25 bp)
GATCCACCTGCCCTTGAGTATGTAT
LOC_Os10g40540
Os.2885.1.S1_at--42--5671Chr10:21371350..21371374 (25 bp)
GACATGGTCGATTCTTACTTTGCTC
LOC_Os10g40540
Os.2885.1.S1_at--1097--10251Chr10:21371314..21371338 (25 bp)
TTTGAGCCTGAGTTGACACTGCCTA
LOC_Os10g40540
Os.2885.1.S1_at--572--5631Chr10:21371300..21371324 (25 bp)
GACACTGCCTACTGAATCGCGAGAG
LOC_Os10g40540
Os.2885.1.S1_at--730--4991Chr10:21371256..21371280 (25 bp)
GCATGACAATTCCAAGTAGCGCTTT
LOC_Os10g40540
Os.2885.1.S1_at--422--291Chr10:21371218..21371242 (25 bp)
ATAGATTTTTGAGCCCACACTGTCG
LOC_Os10g40540
Os.2885.1.S1_at--1147--1951Chr10:21371200..21371224 (25 bp)
ACTGTCGACCGTTGGCAGCACATAA
LOC_Os10g40540
Os.2885.1.S1_at--323--4451Chr10:21371068..21371092 (25 bp)
GCCTTCGCTTCATTTCATTTATACT
LOC_Os10g40540
Os.2885.1.S1_at--815--2351Chr10:21371038..21371062 (25 bp)
AAAGCGTGTCCAAGTCGCCTTGTGA
LOC_Os10g40540
Target Sequence 
AGGCTTCTCCTCTTGCGTTGAAAGTTTCACTGCGATCGATACGTGAAGGTAGATACCAGACACTTGATGAATGCCTTGTG
CGTGAATACCGCATGTCTATCAATGGAATCTCAGAGAAATTTTCTCATGAATTTCGTGAGGGTGTCAGAGCACGTCTTGT
GGAGAAGGACCTAGCTCCAAAGTGGGATCCACCTGCCCTTGAGTATGTATCAGCGGACATGGTCGATTCTTACTTTGCTC
CCCTGGGTGAATTTGAGCCTGAGTTGACACTGCCTACTGAATCGCGAGAGGCATTTGTATGATGACTCTGCATGACAATT
CCAAGTAGCGCTTTTGTTTGAAGCCTTATAGATTTTTGAGCCCACACTGTCGACCGTTGGCAGCACATAATAACAGATAG
GATTCTCAATCTATTCTTGTACCATATATGCCTTGGTGTATTGAAAGGAACTGATCTCCAAGGTGAACTCCTACCATTCT
CACTTTCATAAATTAATGCCTTCGCTTCATTTCATTTATACTATGGCAAAGCGTGTCCAAGTCGCCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis