Browse Element(s) Details


OsAffx.30736.1.S1_x_at

Description tigr:9638.m03681
TID=OsAffx.30736.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4055911/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os10g40559OsAffx.30736.1.S1_x_at11/1110+21392120..21393511Exostosin family protein, expressed
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein
LOC_Os10g40584NANA10+21412305..21413135expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30736.1.S1_x_at--789--1831Chr10:21392988..21393012 (25 bp)
ACGCGTGCGTCGTCGTGGACTGCTC
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--1121--3531Chr10:21393037..21393061 (25 bp)
CATCCGGTACATGCGGCCGATGCTG
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--1016--611Chr10:21393047..21393071 (25 bp)
ATGCGGCCGATGCTGCACTCCAGGT
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--56--6351Chr10:21393055..21393079 (25 bp)
GATGCTGCACTCCAGGTTCTGCCTC
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--900--4751Chr10:21393135..21393159 (25 bp)
GCTGCGTCCCGGTGTTCTTCGAGGA
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--183--4071Chr10:21393168..21393192 (25 bp)
CGAGGCGGCAGTACGGGTGGCACCT
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--1077--5771Chr10:21393209..21393233 (25 bp)
GACGAGTTCTCGGTGTACATACCAA
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--747--6691Chr10:21393214..21393238 (25 bp)
GTTCTCGGTGTACATACCAAAGGAG
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--548--11Chr10:21393227..21393251 (25 bp)
ATACCAAAGGAGTCGGTGGTGTTCG
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--231--8791Chr10:21393246..21393270 (25 bp)
TGTTCGGCGGCGTCAAGATCGCCGA
LOC_Os10g40559
OsAffx.30736.1.S1_x_at--279--9371Chr10:21393411..21393435 (25 bp)
TCGACGGCGCGCTCCGCAGGATACG
LOC_Os10g40559
Target Sequence 
ACGCGTGCGTCGTCGTGGACTGCTCCGGCGGCAGGTGCTCGCACGACCCCATCCGGTACATGCGGCCGATGCTGCACTCC
AGGTTCTGCCTCCAGCCGCCGGGGGACACGCCGACGCGGCGCTCCACGTTCGACGCCATCCTCGCCGGCTGCGTCCCGGT
GTTCTTCGAGGACGCGGCGGCGAGGCGGCAGTACGGGTGGCACCTGCCCCCGGAGAGGTACGACGAGTTCTCGGTGTACA
TACCAAAGGAGTCGGTGGTGTTCGGCGGCGTCAAGATCGCCGAGACGCTGGCGGCGGTGGGCGAGGGCGAGGTGAGGAGG
ATGCGGGAGCGCGCGCTGGAGATGGCGCCGAGGGTGCTGTACCGGCGGCACGGGAGCACGGCGGAGCTGAGCGAGACGGC
CAAGGACGCCGTCGACCTCGCCGTCGACGGCGCGCTCCGCAGGATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30736.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis