Browse Element(s) Details


OsAffx.17966.1.S1_at

Description tigr:9637.m02649
TID=OsAffx.17966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2980010/11hypothetical protein
LOC_Os10g402901/11Pectinacetylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17966.1.S1_at--1086--5931NONE
GAGCAGCGCCCGGTAACAAAGCGAA
NONE
OsAffx.17966.1.S1_at--818--4131Chr09:18111956..18111975 (20 bp)
CGCCCGGTAACAAAGCGAATACATA
LOC_Os09g29800
OsAffx.17966.1.S1_at--400--2671Chr09:18111963..18111987 (25 bp)
AAGCGAATACATAAGATCTTTGAAA
LOC_Os09g29800
OsAffx.17966.1.S1_at--620--11Chr09:18111991..18112015 (25 bp)
ACCAAGTTGGTACATACTTCCTCCG
LOC_Os09g29800
OsAffx.17966.1.S1_at--826--5531Chr09:18112359..18112383 (25 bp)
GAAACAGAAATCCAAGTGCACGAAC
LOC_Os09g29800
OsAffx.17966.1.S1_at--506--3411Chr09:18112363..18112387 (25 bp)
CAGAAATCCAAGTGCACGAACAGAA
LOC_Os09g29800
OsAffx.17966.1.S1_at--770--7331Chr09:18112374..18112398 (25 bp)
GTGCACGAACAGAAGATAAACAAAT
LOC_Os09g29800
OsAffx.17966.1.S1_at--41--232Chr09:18112397..18112421 (25 bp)
ATATCAAGCTATACTTGCAGCCCGT
LOC_Os09g29800
OsAffx.17966.1.S1_at--87--2691Chr09:18112402..18112426 (25 bp)
AAGCTATACTTGCAGCCCGTTTGAA
LOC_Os09g29800
OsAffx.17966.1.S1_at--381--4871Chr09:18112404..18112428 (25 bp)
GCTATACTTGCAGCCCGTTTGAAGG
LOC_Os09g29800
OsAffx.17966.1.S1_at--941--2951Chr09:18112425..18112449 (25 bp)
AAGGCCAAATACTTCTCTAATAAGG
LOC_Os09g29800
Target Sequence 
GAGCAGCGCCCGGTAACAAAGCGAATACATAAGATCTTTGAAAAAGACCAAGTTGGTACATACTTCCTCCGTTTCACAAT
AGAAACAGAAATCCAAGTGCACGAACAGAAGATAAACAAATATCAAGCTATACTTGCAGCCCGTTTGAAGGCCAAATACT
TCTCTAATAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis