Browse Element(s) Details


OsAffx.30086.1.S1_at

Description tigr:9637.m02648
TID=OsAffx.30086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=84465-87513
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2979011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30086.1.S1_at--724--3131Chr09:18100943..18100967 (25 bp)
AATTTTGACTTTCACATCTCTTGTG
LOC_Os09g29790
OsAffx.30086.1.S1_at--1072--4711Chr09:18100774..18100798 (25 bp)
GCTGGATCTGTTGGATGCATGCATA
LOC_Os09g29790
OsAffx.30086.1.S1_at--531--10211Chr09:18100581..18100605 (25 bp)
TATTCACCGAGCTAAAATCCGACCT
LOC_Os09g29790
OsAffx.30086.1.S1_at--1157--3031Chr09:18100566..18100590 (25 bp)
AATCCGACCTGATCAATCAACGCTT
LOC_Os09g29790
OsAffx.30086.1.S1_at--705--3251Chr09:18100549..18100573 (25 bp)
CAACGCTTTGGTACACATTTTGTGC
LOC_Os09g29790
OsAffx.30086.1.S1_at--84--7291Chr09:18100528..18100552 (25 bp)
GTGCCTACGTGGATCAGGAACTGTA
LOC_Os09g29790
OsAffx.30086.1.S1_at--806--5391Chr09:18100490..18100514 (25 bp)
GAAGCATTGCAAGTCCTCAGTGTGA
LOC_Os09g29790
OsAffx.30086.1.S1_at--370--6951Chr09:18100418..18100442 (25 bp)
GTAGAAGATCTAATCCTCAGCGAAG
LOC_Os09g29790
OsAffx.30086.1.S1_at--1004--8971Chr09:18100350..18100374 (25 bp)
TGAACATCTTGCGACAGCCTTACTG
LOC_Os09g29790
OsAffx.30086.1.S1_at--256--811Chr09:18100304..18100328 (25 bp)
ATGGGTTCCACAATATCCTGGTCAC
LOC_Os09g29790
OsAffx.30086.1.S1_at--425--8231Chr09:18100263..18100287 (25 bp)
GGCAAGGAGGTTGGCATCTTCTTAT
LOC_Os09g29790
Target Sequence 
AATTTTGACTTTCACATCTCTTGTGAAGGTTGTATTGGCAAGAGAGGATTTTGAGGGGGCGCTGGATCTGTTGGATGCAT
GCATAATAGAAGGAATTCAGCCTGACATTGAGATTTTCAATACAGTACTCTTAGAGGCATTTGAAAAGGGTCAGATTCAT
GTCGTTGAATATATAGTTGAGTGTATTCACCGAGCTAAAATCCGACCTGATCAATCAACGCTTTGGTACACATTTTGTGC
CTACGTGGATCAGGAACTGTACAATACTGCAATTGAAGCATTGCAAGTCCTCAGTGTGAGAATGATATCTGAGGAGGCCG
ATGTTCTTAAGGAAAAAGGAGTAATTGTAGAAGATCTAATCCTCAGCGAAGAGCCAGATGCTGAATTAAAGATCATGAAG
ACATTTGAAGCAACTGAACATCTTGCGACAGCCTTACTGAACTTGAGGTGGTGTGCAACAATGGGTTCCACAATATCCTG
GTCACCCGAGGATAGCCTCTGGGCAAGGAGGTTGGCATCTTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis