Browse Element(s) Details


Os.49201.1.S1_at

Description gb:AK108319.1
DB_XREF= gi:32993528
TID=Os.49201.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G12, full insert sequence.
FL= gb:AK108319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2982011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed
LOC_Os09g29830Os.38400.1.S1_at11/119+18140490..18143512BHLH transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49201.1.S1_at--90--7351Chr09:18122199..18122223 (25 bp)
GTGAACCTATCCAGGAATTGCTCCC
LOC_Os09g29820
Os.49201.1.S1_at--164--3131Chr09:18122184..18122208 (25 bp)
AATTGCTCCCTGTGGTAGCGGGCAA
LOC_Os09g29820
Os.49201.1.S1_at--963--1111Chr09:18121945..18121969 (25 bp)
AGTGATGTCCACTGCGAGAACGCCC
LOC_Os09g29820
Os.49201.1.S1_at--587--9371Chr09:18121884..18121908 (25 bp)
TCGAGCACCTCATGCAAGCACAGAA
LOC_Os09g29820
Os.49201.1.S1_at--609--1451Chr09:18121863..18121887 (25 bp)
AGAAGAATAACACCTCGCCGAGCTC
LOC_Os09g29820
Os.49201.1.S1_at--502--4791Chr09:18121842..18121866 (25 bp)
GCTCCTCACAGCCATGCGAGAATAT
LOC_Os09g29820
Os.49201.1.S1_at--933--3131Chr09:18121790..18121814 (25 bp)
AATTATCTCCTCATTTTAACTACGA
LOC_Os09g29820
Os.49201.1.S1_at--1127--6791Chr09:18121734..18121758 (25 bp)
GTTTTGAGATGCTTCCTTCGGCTTC
LOC_Os09g29820
Os.49201.1.S1_at--911--9831Chr09:18121685..18121709 (25 bp)
TACGGGAATATTCTAACTGCCCATT
LOC_Os09g29820
Os.49201.1.S1_at--527--1991Chr09:18121670..18121694 (25 bp)
ACTGCCCATTATTGACATCTTTTTG
LOC_Os09g29820
Os.49201.1.S1_at--1086--3091Chr09:18121628..18121652 (25 bp)
AATATGGATTGAGCCTATTGGCGAG
LOC_Os09g29820
Target Sequence 
GTGAACCTATCCAGGAATTGCTCCCTGTGGTAGCGGGCAATCGNCCAGCCGGNTCTGGCAGCACAGATGACGCNTACCAG
ATGGCAGCGGAGGAGGAGCGGAGGCGGCGGAGGATGATCTCCAACCGGGAGTCGGCACGGCGGTCGCGCATGCGCAAGCA
GCGGCAGCTCAGCGAGCTGANGGGGCAGGTTGTCCACNTCCGTGACGCCAACCGNCGNNTCCTTGATGAGCTCAACCAAG
CANTGAGGGGCTGCAGTGATGTCCACTGCGAGAACGCCCGGCTCAGGAAGGAGAGGGCCGAGCTCCAGANCAAGCTCGAG
CACCTCATGCAAGCACAGAAGAATAACACCTCGCCGAGCTCCTCACAGCCATGCGAGAATATTTGATTACTGAATAATAA
ATCATTCTTAATTATCTCCTCATTTTAACTACGAGGATTATTATTAGTATATCAAAATAAGACATGTTTTGAGATGCTTC
CTTCGGCTTCTGTTTTTTTGTTTTATCTTTTATGTACGGGAATATTCTAACTGCCCATTATTGACATCTTTTTGTCAAGG
TGGCTAAGATAAATATGGATTGAGCCTATTGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis