Browse Element(s) Details


Os.55789.1.S1_at

Description gb:AK108803.1
DB_XREF= gi:32994012
TID=Os.55789.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C11, full insert sequence.
FL= gb:AK108803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g297901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55789.1.S1_at--533--4551Chr09:18108565..18108589 (25 bp)
GCCCAGGAGCTCTACGGACGACATC
NONE
Os.55789.1.S1_at--853--451Chr09:18108544..18108567 (24 bp)
ATCTCCCTCGATGCATCGAATACTA
NONE
Os.55789.1.S1_at--970--5231Chr09:18108448..18108550 (25 bp)
GAATACTATCGAGAGCCGCTCGCCG
NONE
Os.55789.1.S1_at--754--7771Chr09:18108424..18108448 (25 bp)
GGTGCACCAATTCCTCCGCGGCATT
NONE
Os.55789.1.S1_at--965--4191Chr09:18108394..18108418 (25 bp)
CCCCGCAGATTGTAACGAAGAGTTT
NONE
Os.55789.1.S1_at--859--5351Chr09:18108378..18108402 (25 bp)
GAAGAGTTTCTTCCTTGCGTCCTTA
NONE
Os.55789.1.S1_at--52--4311Chr09:18108366..18108390 (25 bp)
CCTTGCGTCCTTATGTATTTTCTGT
NONE
Os.55789.1.S1_at--470--3891Chr09:18108345..18108369 (25 bp)
CTGTGCGTTGGTGTGTATTCTGGAT
NONE
Os.55789.1.S1_at--1018--5331Chr09:18108317..18108341 (25 bp)
GAAGTTGCACGTTTTGCAGGCGCAA
NONE
Os.55789.1.S1_at--522--10731Chr09:18108304..18108328 (25 bp)
TTGCAGGCGCAAGCCAATGTGGTTA
NONE
Os.55789.1.S1_at--413--271Chr09:18108053..18108077 (25 bp)
ATAGTTTGGAGCCTGAGGTTCCCTT
LOC_Os09g29790
Target Sequence 
GCCCAGGAGCTCTACGGACGACATCTCCCTCGATGCATCGAATACTATCGAGAGCCGCTCGCCGGTGCACCAATTCCTCC
GCGGCATTCAAGCCCCCGCAGATTGTAACGAAGAGTTTCTTCCTTGCGTCCTTATGTATTTTCTGTGCGTTGGTGTGTAT
TCTGGATGCTGAAGTTGCACGTTTTGCAGGCGCAAGCCAATGTGGTTAGTGGAGTTCACTCCGGAGAGGCCTCAACTTGT
TCAAACGGTGCTGGGCTTTACACCTTTTCGTTGTACTGTCATGTTCTCCTTATGGAAGGCCATAACTGTTGTTTCTAATC
TAGTTACCCAGTTCTATGCTTGCAAATTGTATATGAACGGTATATTGCAAGAAACGTGATGATCAAATGGGGAACTAAGC
GTTTTCCTTTTATTTTTTTTTTGGGGTAAATTCATATAGTTTGGAGCCTGAGGTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis