Browse Element(s) Details


OsAffx.17965.1.S1_at

Description tigr:9637.m02645
TID=OsAffx.17965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2976011/11membrane associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29710Os.7530.1.S1_at11/119+18066435..18067412Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29720OsAffx.10637.3.S1_s_at11/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.1.S1_s_at10/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.4.S1_s_at8/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17965.1.S1_at--36--1471Chr09:18090920..18090944 (25 bp)
AGAAGTACCGCGTCGGCGTGGTGCA
LOC_Os09g29760
OsAffx.17965.1.S1_at--405--5971Chr09:18090967..18090991 (25 bp)
GAGAAGCGCGCGCTGATCCACCACA
LOC_Os09g29760
OsAffx.17965.1.S1_at--695--8851Chr09:18090980..18091004 (25 bp)
TGATCCACCACATCTTCGAGTTCAA
LOC_Os09g29760
OsAffx.17965.1.S1_at--874--4351Chr09:18090984..18091008 (25 bp)
CCACCACATCTTCGAGTTCAAGGAG
LOC_Os09g29760
OsAffx.17965.1.S1_at--290--1591Chr09:18091010..18091034 (25 bp)
AGCTCGGCCTCACGCGGCACATGCA
LOC_Os09g29760
OsAffx.17965.1.S1_at--433--9131Chr09:18091043..18091067 (25 bp)
TGCGGAAGCAGAGCCGCGCCTTCTA
LOC_Os09g29760
OsAffx.17965.1.S1_at--687--9971Chr09:18091066..18091090 (25 bp)
TACCTCGCCGGCACGGAGATGAACT
LOC_Os09g29760
OsAffx.17965.1.S1_at--389--671Chr09:18091084..18091108 (25 bp)
ATGAACTGGGCCGTGTTCCTCAGGG
LOC_Os09g29760
OsAffx.17965.1.S1_at--412--2551Chr09:18091087..18091111 (25 bp)
AACTGGGCCGTGTTCCTCAGGGACG
LOC_Os09g29760
OsAffx.17965.1.S1_at--269--4471Chr09:18091093..18091117 (25 bp)
GCCGTGTTCCTCAGGGACGCGTACG
LOC_Os09g29760
OsAffx.17965.1.S1_at--624--2691Chr09:18091168..18091192 (25 bp)
AAGCTGCGGCGCTACGCGTGCATGA
LOC_Os09g29760
Target Sequence 
AGAAGTACCGCGTCGGCGTGGTGCACGAGTTCCTCAGCCTGACGCTGGAGAAGCGCGCGCTGATCCACCACATCTTCGAG
TTCAAGGAGGAGCTCGGCCTCACGCGGCACATGCACGCGTCGCTGCGGAAGCAGAGCCGCGCCTTCTACCTCGCCGGCAC
GGAGATGAACTGGGCCGTGTTCCTCAGGGACGCGTACGGCGGCGACGGCGATCTCAGGGAGAAGGACCCCCTCGTGCTGT
TCAACGAGAAGCTGCGGCGCTACGCGTGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis