Browse Element(s) Details


OsAffx.30084.1.S1_at

Description tigr:9637.m02643
TID=OsAffx.30084.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to blight-associated protein p12 precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2974010/11Expansin-related protein 2 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29700NANA9+18058643..18063517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g29710Os.7530.1.S1_at11/119+18066435..18067412Expansin-related protein 2 precursor, putative, expressed
LOC_Os09g29720OsAffx.10637.3.S1_s_at11/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.1.S1_s_at10/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.4.S1_s_at8/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30084.1.S1_at--208--8231Chr09:18083737..18083761 (25 bp)
GGCAAGATCCTCGTCGAATACCACG
LOC_Os09g29740
OsAffx.30084.1.S1_at--841--5171Chr09:18083738..18083762 (25 bp)
GCAAGATCCTCGTCGAATACCACGA
LOC_Os09g29740
OsAffx.30084.1.S1_at--17--2811NONE
AAGATCCTCGTCGAATACCACGAAT
NONE
OsAffx.30084.1.S1_at--776--6371Chr09:18083742..18083762 (21 bp)
GATCCTCGTCGAATACCACGAATTT
LOC_Os09g29740
OsAffx.30084.1.S1_at--240--9171Chr09:18083744..18083846 (25 bp)
TCCTCGTCGAATACCACGAATTTAT
LOC_Os09g29740
OsAffx.30084.1.S1_at--307--7231Chr09:18083749..18083851 (25 bp)
GTCGAATACCACGAATTTATTCACG
LOC_Os09g29740
OsAffx.30084.1.S1_at--820--5231Chr09:18083752..18083854 (25 bp)
GAATACCACGAATTTATTCACGATA
LOC_Os09g29740
OsAffx.30084.1.S1_at--840--5211Chr09:18083841..18083863 (23 bp)
GAATTTATTCACGATAAGCTGTGCT
LOC_Os09g29740
OsAffx.30084.1.S1_at--393--10351Chr09:18083842..18083866 (25 bp)
TTTATTCACGATAAGCTGTGCTCAT
LOC_Os09g29740
OsAffx.30084.1.S1_at--845--111Chr09:18083845..18083869 (25 bp)
ATTCACGATAAGCTGTGCTCATTTG
LOC_Os09g29740
OsAffx.30084.1.S1_at--310--9691Chr09:18083847..18083871 (25 bp)
TCACGATAAGCTGTGCTCATTTGCA
LOC_Os09g29740
Target Sequence 
GGCAAGATCCTCGTCGAATACCACGAATTTATTCACGATAAGCTGTGCTCATTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis