Browse Element(s) Details


OsAffx.6443.1.A1_at

Description tigr:9637.m02646
TID=OsAffx.6443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29720OsAffx.10637.3.S1_s_at11/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.1.S1_s_at10/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29720OsAffx.10637.4.S1_s_at8/119+18068119..18071439transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_x_at9/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29730OsAffx.32056.1.S1_at2/119+18077362..18080517transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g29740OsAffx.30084.1.S1_at10/119+18083521..18083901Expansin-related protein 2 precursor, putative
LOC_Os09g29750Os.10846.1.S1_at11/119+18084525..18089758expressed protein
LOC_Os09g29760OsAffx.17965.1.S1_at11/119+18090034..18091413membrane associated salt-inducible protein, putative, expressed
LOC_Os09g29780OsAffx.6443.1.A1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.1.S1_a_at11/119+18095794..18099391expressed protein
LOC_Os09g29780OsAffx.30085.1.S1_at11/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.3.S1_at10/119+18095794..18099391expressed protein
LOC_Os09g29780Os.7710.2.A1_at10/119+18095794..18099391expressed protein
LOC_Os09g29790OsAffx.30086.1.S1_at11/119+18100203..18108312expressed protein
LOC_Os09g29790Os.55789.1.S1_at1/119+18100203..18108312expressed protein
LOC_Os09g29800OsAffx.17966.1.S1_at10/119+18110329..18112595hypothetical protein
LOC_Os09g29810Os.45957.4.S1_x_at8/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29810Os.39411.1.A1_at4/119+18114124..18120049retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29820Os.49201.1.S1_at11/119+18121626..18122462bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6443.1.A1_at--737--1891Chr09:18097144..18097168 (25 bp)
ACGTCTCTTGTTTTGTCCTCTTCTA
LOC_Os09g29780
OsAffx.6443.1.A1_at--545--8711Chr09:18097131..18097155 (25 bp)
TGTCCTCTTCTACTGGTCTTCTCAT
LOC_Os09g29780
OsAffx.6443.1.A1_at--619--9611Chr09:18097110..18097134 (25 bp)
TCATCTCCTTTCTTTATCTTGCCTA
LOC_Os09g29780
OsAffx.6443.1.A1_at--444--10691Chr09:18097092..18097116 (25 bp)
TTGCCTACCTTTTTGCTGTAGCTGG
LOC_Os09g29780
OsAffx.6443.1.A1_at--149--1211Chr09:18097062..18097086 (25 bp)
AGTTTGGTGGGTATCTCATCTTGTT
LOC_Os09g29780
OsAffx.6443.1.A1_at--507--431Chr09:18097045..18097069 (25 bp)
ATCTTGTTCGTCCTTAGCATGTTGA
LOC_Os09g29780
OsAffx.6443.1.A1_at--719--1531Chr09:18097030..18097054 (25 bp)
AGCATGTTGATGTCTGTTACCACCA
LOC_Os09g29780
OsAffx.6443.1.A1_at--45--7191Chr09:18097019..18097043 (25 bp)
GTCTGTTACCACCATTCATTTGATG
LOC_Os09g29780
OsAffx.6443.1.A1_at--149--10571Chr09:18096985..18097009 (25 bp)
TTCTTTGCCTTCTTGCATCTTCACT
LOC_Os09g29780
OsAffx.6443.1.A1_at--874--431Chr09:18096969..18096993 (25 bp)
ATCTTCACTTCAGCTGGTCCAGTGG
LOC_Os09g29780
OsAffx.6443.1.A1_at--400--7271Chr09:18096777..18096801 (25 bp)
GTCCACCCGGATTCATTACTGTTGC
LOC_Os09g29780
Target Sequence 
ACGTCTCTTGTTTTGTCCTCTTCTACTGGTCTTCTCATCTCCTTTCTTTATCTTGCCTACCTTTTTGCTGTAGCTGGTTG
AGAGTTTGGTGGGTATCTCATCTTGTTCGTCCTTAGCATGTTGATGTCTGTTACCACCATTCATTTGATGATCTTTCTCT
TCTTTGCCTTCTTGCATCTTCACTTCAGCTGGTCCAGTGGAAGCATCAGAAGCCAATGAGTCGTAATCTCCATCATCGTT
TGCATGGCCTTTGTTTTCTTTCCCTCTGCGCCTCTCATTGCTAAATCCGCTGCCATCTTCTACGTTACTTCCTTCACTGA
CAATTGCTCTCACGTCATCACTATGTGTGGGGGATGCCAGGTACATCGTCCACCCGGATTCATTACTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6443.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis