Browse Element(s) Details


Os.46822.1.S1_at

Description gb:AK109724.1
DB_XREF= gi:32994933
TID=Os.46822.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0015J15.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B06, full insert sequence.
FL= gb:AK109724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4028011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46822.1.S1_at--66--8111Chr10:21264226..21264250 (25 bp)
GGACGCAAGGTGAAAAGCTTCGATT
LOC_Os10g40280
Os.46822.1.S1_at--400--1551Chr10:21264241..21264265 (25 bp)
AGCTTCGATTTTTTCTCTTCATGTA
LOC_Os10g40280
Os.46822.1.S1_at--395--9571Chr10:21264256..21264280 (25 bp)
TCTTCATGTATTGTCAAGCAGCTCA
LOC_Os10g40280
Os.46822.1.S1_at--776--2011Chr10:21264315..21264339 (25 bp)
ACTCAGATGTGCATGGTTTAGCTCT
LOC_Os10g40280
Os.46822.1.S1_at--147--6831Chr10:21264330..21264354 (25 bp)
GTTTAGCTCTTTAGCCTCTTACAGA
LOC_Os10g40280
Os.46822.1.S1_at--282--3431Chr10:21264351..21264375 (25 bp)
CAGAGTTTACAGTTCAGTGTCATAT
LOC_Os10g40280
Os.46822.1.S1_at--828--7131Chr10:21264369..21264393 (25 bp)
GTCATATATGAGTCCTGCTTCTGCA
LOC_Os10g40280
Os.46822.1.S1_at--961--4271Chr10:21264382..21264406 (25 bp)
CCTGCTTCTGCAATTGTGATCTCAA
LOC_Os10g40280
Os.46822.1.S1_at--1158--6411Chr10:21264399..21264423 (25 bp)
GATCTCAAGTGCTAATCAATTGTGT
LOC_Os10g40280
Os.46822.1.S1_at--146--6951Chr10:21264442..21264466 (25 bp)
GTAGCATGTTAATCTGCTTCTGCAA
LOC_Os10g40280
Os.46822.1.S1_at--765--9011Chr10:21264462..21264486 (25 bp)
TGCAATGCATATTCTCTCGCTTTTT
LOC_Os10g40280
Target Sequence 
GGACGCAAGGTGAAAAGCTTCGATTTTTTCTCTTCATGTATTGTCAAGCAGCTCAAGCAAATCAGGGTAAAGATAGTGAT
AGCATCATGACTCAGATGTGCATGGTTTAGCTCTTTAGCCTCTTACAGAGTTTACAGTTCAGTGTCATATATGAGTCCTG
CTTCTGCAATTGTGATCTCAAGTGCTAATCAATTGTGTAGAGCTTTTGATACTGTTGTAGCATGTTAATCTGCTTCTGCA
ATGCATATTCTCTCGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis