Browse Element(s) Details


Os.3270.1.S1_at

Description gb:AK065729.1
DB_XREF= gi:32975747
TID=Os.3270.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0082M15.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035P21, full insert sequence.
FL= gb:AK065729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4025011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein
LOC_Os10g40240Os.40626.1.S1_at11/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40240Os.40626.2.S1_x_at7/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3270.1.S1_at--385--1291Chr10:21233211..21233235 (25 bp)
AGATCCCTTATCAGTGTTGCTTTGT
LOC_Os10g40250
Os.3270.1.S1_at--350--2451Chr10:21233316..21233340 (25 bp)
AACAAGGGCACTATGTTCTGGCGGC
LOC_Os10g40250
Os.3270.1.S1_at--83--9471Chr10:21233332..21233356 (25 bp)
TCTGGCGGCCCAAGGAAAGTATCAT
LOC_Os10g40250
Os.3270.1.S1_at--1106--171Chr10:21233371..21233395 (25 bp)
ATTTACTGGTCCAAATGTCTGACTG
LOC_Os10g40250
Os.3270.1.S1_at--771--3451Chr10:21233480..21233504 (25 bp)
CAGTCTGTAACAGCCATGCCTCTAG
LOC_Os10g40250
Os.3270.1.S1_at--228--9531Chr10:21233500..21233524 (25 bp)
TCTAGGCACCCAGGCATACAGCAGT
LOC_Os10g40250
Os.3270.1.S1_at--1132--3391Chr10:21233518..21233542 (25 bp)
CAGCAGTCCGAATTTTTCTCTTGTC
LOC_Os10g40250
Os.3270.1.S1_at--133--10591Chr10:21233533..21233557 (25 bp)
TTCTCTTGTCCATTGTGTGCATGTT
LOC_Os10g40250
Os.3270.1.S1_at--527--8771Chr10:21233554..21233578 (25 bp)
TGTTTGTGAACCTTACCCCGATACG
LOC_Os10g40250
Os.3270.1.S1_at--113--1811Chr10:21233568..21233592 (25 bp)
ACCCCGATACGCTTGTCAACAAAGA
LOC_Os10g40250
Os.3270.1.S1_at--597--6131Chr10:21233591..21233615 (25 bp)
GAGGGCTAGATCACTTCAATGTACA
LOC_Os10g40250
Target Sequence 
AGATCCCTTATCAGTGTTGCTTTGTGACGAGTATAGGCAGTATGTAGATGAACTGTAGAGGTTTTGATTTTGATGCTGAC
AATAACCCATTTTATGCGGAAGAATAACAAGGGCACTATGTTCTGGCGGCCCAAGGAAAGTATCATGTGATTGGGGAGAC
ATTTACTGGTCCAAATGTCTGACTGGAGTGGACAGTTTCTTGTGAATGACAGCTGAAGTTACAATGCTGTGAATATCTGA
CTTGTTCAGTTTGTTTGGATGAAATTGGCCAGTCTGTAACAGCCATGCCTCTAGGCACCCAGGCATACAGCAGTCCGAAT
TTTTCTCTTGTCCATTGTGTGCATGTTTGTGAACCTTACCCCGATACGCTTGTCAACAAAGAGGGCTAGATCACTTCAAT
GTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis