Browse Element(s) Details


OsAffx.18587.2.S1_at

Description tigr:9638.m03645
TID=OsAffx.18587.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4022011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein
LOC_Os10g40240Os.40626.1.S1_at11/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40240Os.40626.2.S1_x_at7/1110+21224647..21228036transposase, putative, expressed
LOC_Os10g40250Os.3270.1.S1_at11/1110+21228500..21233698expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18587.2.S1_at--557--10253Chr10:21210972..21210996 (25 bp)
TTTGGGTGCCGAGTGCAGCATATAA
LOC_Os10g40220
OsAffx.18587.2.S1_at--143--2431Chr10:21210995..21211019 (25 bp)
AAAACTTAGGCGTCCTACTTCTGCT
LOC_Os10g40220
OsAffx.18587.2.S1_at--522--3732Chr10:21211009..21211033 (25 bp)
CTACTTCTGCTGACTATTTGGGTGG
LOC_Os10g40220
OsAffx.18587.2.S1_at--1095--7713Chr10:21211028..21211052 (25 bp)
GGGTGGCCACAAGGATATCTGTTCT
LOC_Os10g40220
OsAffx.18587.2.S1_at--829--10432Chr10:21211121..21211145 (25 bp)
TTAGTTTCAGAATCACCCGCAAGTA
LOC_Os10g40220
OsAffx.18587.2.S1_at--539--2152Chr10:21211134..21211158 (25 bp)
CACCCGCAAGTAGAAAGGTTGTGTT
LOC_Os10g40220
OsAffx.18587.2.S1_at--931--8672Chr10:21211153..21211177 (25 bp)
TGTGTTGCTGAACGTTTTCTCGGAT
LOC_Os10g40220
OsAffx.18587.2.S1_at--377--6811Chr10:21211166..21211190 (25 bp)
GTTTTCTCGGATGGGCTTTAGCAAA
LOC_Os10g40220
OsAffx.18587.2.S1_at--1093--2671Chr10:21211189..21211213 (25 bp)
AAGCGGCATGTAATTTATGTTCTGT
LOC_Os10g40220
OsAffx.18587.2.S1_at--1009--6711Chr10:21211207..21211231 (25 bp)
GTTCTGTGTAGGTTCTACTCTGGAA
LOC_Os10g40220
OsAffx.18587.2.S1_at--896--7392Chr10:21211247..21211271 (25 bp)
GTGATGTACACTGTATGCTTTTGTA
LOC_Os10g40220
Target Sequence 
TTTGGGTGCCGAGTGCAGCATATAAAACTTAGGCGTCCTACTTCTGCTGACTATTTGGGTGGCCACAAGGATATCTGTTC
TGAATATATAGATGTAGAGTATTGTTTTGATGACTATTGACTAATATTAATGTACCTACTTATAACAGATTAGTTTCAGA
ATCACCCGCAAGTAGAAAGGTTGTGTTGCTGAACGTTTTCTCGGATGGGCTTTAGCAAAGCGGCATGTAATTTATGTTCT
GTGTAGGTTCTACTCTGGAACGGTGCTACAATATTGTGATGTACACTGTATGCTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18587.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis