Browse Element(s) Details


OsAffx.30732.1.S1_at

Description gb:NM_197649.1
DB_XREF= gi:37536657
TID=OsAffx.30732.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0082M15.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4021011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30732.1.S1_at--609--9991Chr10:21196504..21196528 (25 bp)
TAGCCTTCGCGATCTGTGCGCGGTT
LOC_Os10g40210
OsAffx.30732.1.S1_at--226--7291Chr10:21196519..21196673 (25 bp)
GTGCGCGGTTTCAGGAACGATCAAT
LOC_Os10g40210
OsAffx.30732.1.S1_at--1081--4031Chr10:21196666..21196690 (25 bp)
CGATCAATCACGTTCGACTCATCAT
LOC_Os10g40210
OsAffx.30732.1.S1_at--689--5711Chr10:21196681..21196705 (25 bp)
GACTCATCATCCTATCACAAGCTTG
LOC_Os10g40210
OsAffx.30732.1.S1_at--691--2211Chr10:21196697..21196718 (22 bp)
ACAAGCTTGGTGACGATTCAGGCTA
LOC_Os10g40210
OsAffx.30732.1.S1_at--84--8951Chr10:21196707..21197114 (25 bp)
TGACGATTCAGGCTACATGCGGATT
LOC_Os10g40210
OsAffx.30732.1.S1_at--559--8311Chr10:21197100..21197124 (25 bp)
GGCTACATGCGGATTGATTTTGTGT
LOC_Os10g40210
OsAffx.30732.1.S1_at--1047--6531Chr10:21197115..21197139 (25 bp)
GATTTTGTGTTTCATGGTTTCCCCA
LOC_Os10g40210
OsAffx.30732.1.S1_at--626--7411Chr10:21197121..21197145 (25 bp)
GTGTTTCATGGTTTCCCCACAAAAG
LOC_Os10g40210
OsAffx.30732.1.S1_at--1133--6831Chr10:21197131..21197155 (25 bp)
GTTTCCCCACAAAAGGACTGATGCT
LOC_Os10g40210
OsAffx.30732.1.S1_at--841--631Chr10:21197151..21197175 (25 bp)
ATGCTTATTCAGAAGCACAGCTTCG
LOC_Os10g40210
Target Sequence 
TAGCCTTCGCGATCTGTGCGCGGTTTCAGGAACGATCAATCACGTTCGACTCATCATCCTATCACAAGCTTGGTGACGAT
TCAGGCTACATGCGGATTGATTTTGTGTTTCATGGTTTCCCCACAAAAGGACTGATGCTTATTCAGAAGCACAGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis