Browse Element(s) Details


Os.46502.1.S1_at

Description gb:AK070309.1
DB_XREF= gi:32980333
TID=Os.46502.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0082M15.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047B15, full insert sequence.
FL= gb:AK070309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g401702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46502.1.S1_at--102--8011Chr10:21175836..21175860 (25 bp)
GGATGGTTAGCCTTAACCCACTTGT
LOC_Os10g40170
Os.46502.1.S1_at--353--7891Chr10:21175808..21175832 (25 bp)
GGTTCTTCACTCCATTAAATTCTCG
LOC_Os10g40170
Os.46502.1.S1_at--549--2831Chr10:21175645..21175669 (25 bp)
AAGTTTGTTTCATGTCAAGACGACA
NONE
Os.46502.1.S1_at--208--5511Chr10:21175594..21175618 (25 bp)
GAACACGAGCATTGTCCAGCCATGG
NONE
Os.46502.1.S1_at--424--1171Chr10:21175551..21175575 (25 bp)
AGTAAATAGTACCTTCGCCGCATAA
NONE
Os.46502.1.S1_at--302--3571Chr10:21175501..21175525 (25 bp)
CATATCCCAGTACTTGTCCAAATTC
NONE
Os.46502.1.S1_at--1009--5231Chr10:21175421..21175445 (25 bp)
GAATACATGTTCCTAATTTGGCCAT
NONE
Os.46502.1.S1_at--403--10111Chr10:21175394..21175418 (25 bp)
TATGGTATGCCAAGCCATGGCTCTC
NONE
Os.46502.1.S1_at--633--3491Chr10:21175367..21175391 (25 bp)
CAGGCTCCTTGTTTGGTCTTGATAT
NONE
Os.46502.1.S1_at--641--8751Chr10:21175315..21175339 (25 bp)
TGTAGTTACGCTCCAGGCACATAAA
NONE
Os.46502.1.S1_at--427--10071Chr10:21175290..21175314 (25 bp)
TAGTGCCCACCAAATATGCAATGCA
NONE
Target Sequence 
GGATGGTTAGCCTTAACCCACTTGTGTGGGTTCTTCACTCCATTAAATTCTCGTGTGTAGTTGAGCTGGATAAGCGGTGC
TATTGCAATCTCAAGGTGGTGAACAACAGCGAGCATCATGCTGCATTCAAGGTCCATGGCCTTCCATTTCATGACCAATA
TTTTCTAAAACTTGGCGAGAAGGCTTGATGAAAGTTTGTTTCATGTCAAGACGACATTACCGAGGAAGTATTTTGTCCGG
CCGAACACGAGCATTGTCCAGCCATGGGATTCTTGCACAATAACAAGTAAATAGTACCTTCGCCGCATAATAAGTTAATC
TAATACGAGATGTGACATATCCCAGTACTTGTCCAAATTCATAGTACTAGTATATATCACATCTTGTATTAGATTAATTT
ATTCTGGGACGGAGGGAATACATGTTCCTAATTTGGCCATTTTATGGTATGCCAAGCCATGGCTCTCTTCAGGCTCCTTG
TTTGGTCTTGATATTTGGATATCTGCATTGTTCTTGGGTGATGTAGTTACGCTCCAGGCACATAAATAGTGCCCACCAAA
TATGCAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis