Browse Element(s) Details


Os.3278.1.S1_at

Description gb:AK067162.1
DB_XREF= gi:32977180
TID=Os.3278.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6 -diaminopimelate ligase (OSJNBa0082M15.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095I09, full insert sequence.
FL= gb:AK058225.1 gb:AK067162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4013011/11UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0005524molecular_functionATP binding
GO:0016874molecular_functionligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3278.1.S1_at--715--10751Chr10:21154560..21154584 (25 bp)
TTGACATCCGACAACCCAGCAAATG
LOC_Os10g40130
Os.3278.1.S1_at--627--2291Chr10:21154361..21154385 (25 bp)
AAATGATTATTACCCACCACTGCCG
LOC_Os10g40130
Os.3278.1.S1_at--119--1611Chr10:21154289..21154313 (25 bp)
AGCTGCTGTCGCGATGGGTGAACAA
LOC_Os10g40130
Os.3278.1.S1_at--1029--5351Chr10:21153653..21153677 (25 bp)
GAAGAATGCCGAGAAGCCTTACAAT
LOC_Os10g40130
Os.3278.1.S1_at--870--8831Chr10:21153624..21153648 (25 bp)
TGATCAATTGCATCGAGCTGGAATA
LOC_Os10g40130
Os.3278.1.S1_at--729--4711Chr10:21153608..21153632 (25 bp)
GCTGGAATAGACACCTCAGAATTTC
LOC_Os10g40130
Os.3278.1.S1_at--166--8031Chr10:21153262..21153284 (23 bp)
GGAGGTTACCTGAAAGCCACTGATT
LOC_Os10g40130
Os.3278.1.S1_at--819--231Chr10:21153225..21153249 (25 bp)
ATATAGCCGGGCTTCTTCTTTGCTT
LOC_Os10g40130
Os.3278.1.S1_at--91--5051Chr10:21153191..21153215 (25 bp)
GCAGCATTTTAGATTCTCCCTTTTT
LOC_Os10g40130
Os.3278.1.S1_at--791--7991Chr10:21153157..21153181 (25 bp)
GGATGTACTTCAGACCAGCGGGTGC
LOC_Os10g40130
Os.3278.1.S1_at--232--3111Chr10:21153067..21153091 (25 bp)
AATATATGCAATGCAGCTTCCCCTT
LOC_Os10g40130
Target Sequence 
TTGACATCCGACAACCCAGCAAATGAAGATCCATTGGATATCCTGGATGATATGCTGGCGGGAGTAGGGTGGACCATGGA
AGAATACTTGAAGCATGGCACAAATGATTATTACCCACCACTGCCGAATGGACATAGGATATTCCTACATGATATTAGAA
GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTGTTATCACTGGGAAAGGGAATGATACTTAT
CAGATTGAAGTCGATAAAAAGGAGTTCTTTGATGATAGGGAAGAATGCCGAGAAGCCTTACAATATGTTGATCAATTGCA
TCGAGCTGGAATAGACACCTCAGAATTTCCATGGAGGTTACCTGAAAGCCACTGATTCTGANTGTATTCAATATAGCCGG
GCTTCTTCTTTGCTTGCTCAAGGAGCAGCATTTTAGATTCTCCCTTTTTGCTANGGTAGGATGTACTTCAGACCAGCGGG
TGCTCAAGGTTGNCTACTTGACCCCCAGTACTAACTGCTAACTTCTCAGTGATACTCAGTAGGTACAAAATATATGCAAT
GCAGCTTCCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis