Browse Element(s) Details


OsAffx.7927.1.S1_at

Description tigr:9638.m03629
TID=OsAffx.7927.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7927.1.S1_at--633--9411Chr10:21130518..21130542 (25 bp)
TCGTCGAGTCGATCCGCCAGCGAAT
LOC_Os10g40070
OsAffx.7927.1.S1_at--1056--6351Chr10:21130528..21130552 (25 bp)
GATCCGCCAGCGAATCGGTTCCGAG
LOC_Os10g40070
OsAffx.7927.1.S1_at--512--5231Chr10:21130539..21130563 (25 bp)
GAATCGGTTCCGAGTGCCTCGTCGA
LOC_Os10g40070
OsAffx.7927.1.S1_at--478--4011Chr10:21130633..21130657 (25 bp)
CGTCCGCCTCGAGCAGATGAGCAAG
LOC_Os10g40070
OsAffx.7927.1.S1_at--541--5931Chr10:21130643..21130667 (25 bp)
GAGCAGATGAGCAAGGCCGTCCGCT
LOC_Os10g40070
OsAffx.7927.1.S1_at--432--2951Chr10:21130655..21130679 (25 bp)
AAGGCCGTCCGCTGGCTCGTCATCG
LOC_Os10g40070
OsAffx.7927.1.S1_at--188--951Chr10:21130803..21130827 (25 bp)
AGGACGGCGCCCAGTAGGTATTTAT
LOC_Os10g40070
OsAffx.7927.1.S1_at--666--4551Chr10:21130811..21130835 (25 bp)
GCCCAGTAGGTATTTATTTTGCTCA
LOC_Os10g40070
OsAffx.7927.1.S1_at--1123--2451Chr10:21130871..21130895 (25 bp)
AACAAATTACTGGTGGTATCTCTGT
LOC_Os10g40070
OsAffx.7927.1.S1_at--688--7731Chr10:21130882..21130906 (25 bp)
GGTGGTATCTCTGTGTAATCGTCTA
LOC_Os10g40070
OsAffx.7927.1.S1_at--100--6911Chr10:21130886..21130910 (25 bp)
GTATCTCTGTGTAATCGTCTAAGAA
LOC_Os10g40070
Target Sequence 
TCGTCGAGTCGATCCGCCAGCGAATCGGTTCCGAGTGCCTCGTCGACGAGGCCACCGGCGCCTCCTCCTCCTCCTCCGCG
GCGCTGGCCGCCCCCGGCATCAAGCCCATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTCAT
CGAGCTCCAGCACGGCGCCGGAGGTGCCTCCGCCGCGGGTCCCGGCGGCGGGGGCGGCGCCGCGGCTGCGGCTTCCGGCG
TTGCGGGGCAGCACGGCCACGGCGGGGTCGACACGCGCTTCCCCGAGGACGGCGCCCAGTAGGTATTTATTTTGCTCAAT
TATCTTGTACTAGTAGTATTTTCTTCCAAAGAAAACAAATTACTGGTGGTATCTCTGTGTAATCGTCTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis