Browse Element(s) Details


Os.3284.1.S1_at

Description gb:AK072270.1
DB_XREF= gi:32982293
TID=Os.3284.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative outer envelope protein (OSJNBa0082M15.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full insert sequence.
FL= gb:AK072270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4011011/11chloroplast outer membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0004888molecular_functiontransmembrane receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3284.1.S1_at--487--2811Chr10:21144434..21144458 (25 bp)
AAGATTACCCAATTGGCCGCATGCT
LOC_Os10g40110
Os.3284.1.S1_at--280--311Chr10:21144402..21144426 (25 bp)
ATAGCGCTCTCTGTTGTTGATTGGC
LOC_Os10g40110
Os.3284.1.S1_at--88--7671Chr10:21144374..21144398 (25 bp)
GGGATCTTGCTGTTGGCTGCAACAT
LOC_Os10g40110
Os.3284.1.S1_at--70--2511Chr10:21144354..21144378 (25 bp)
AACATCCAGTCTCAGATTCCTGCTG
LOC_Os10g40110
Os.3284.1.S1_at--471--2571Chr10:21144283..21144307 (25 bp)
AACTGGTCAAGTTGGCATTCGCCTC
LOC_Os10g40110
Os.3284.1.S1_at--750--8071Chr10:21144250..21144274 (25 bp)
GGAGCATCTTGAGATCGCCCTTATT
LOC_Os10g40110
Os.3284.1.S1_at--359--10691Chr10:21144227..21144251 (25 bp)
TTGCCCTCGTGCCAATATACCAAAA
LOC_Os10g40110
Os.3284.1.S1_at--81--10151Chr10:21144068..21144092 (25 bp)
TATCTATTTATTTTCTTCTTCCCTT
LOC_Os10g40110
Os.3284.1.S1_at--822--10551Chr10:21144053..21144077 (25 bp)
TTCTTCCCTTACCTACACGTAATAG
LOC_Os10g40110
Os.3284.1.S1_at--189--6651Chr10:21143959..21143983 (25 bp)
GTTGTTATCCTTGTACTCTCAATAG
LOC_Os10g40110
Os.3284.1.S1_at--351--2291Chr10:21143920..21143944 (25 bp)
AAATGCACTGCTGTTTTGAAGGCTG
LOC_Os10g40110
Target Sequence 
AAGATTACCCAATTGGCCGCATGCTTTCTACCATAGCGCTCTCTGTTGTTGATTGGCATGGGGATCTTGCTGTTGGCTGC
AACATCCAGTCTCAGATTCCTGCTGGAAGAGCTAGCAATTTGATTGGTCATGCGAATCTAAGCAACAAGGGAACTGGTCA
AGTTGGCATTCGCCTCAACAGCTCGGAGCATCTTGAGATCGCCCTTATTGCCCTCGTGCCAATATACCAAAACATCAAGA
AGTTATTGCAGAGTTAATCCGTATCAACCAGTATTTATGTAAGCGAGAAAAGGCAGCAAGATAAATCCATTAGAGTTAAT
GCAAGCATAAATTAGAACTAGAGTTAATGCAAGCATAAATTAGAACTATCTATTTATTTTCTTCTTCCCTTACCTACACG
TAATAGTGTTTTCTTCCAAGTTTTTTTTTTTTTGATGAAGTTGGATTTGCAGAACACATCCTTTTCAGGATTTTTGTTGT
TATCCTTGTACTCTCAATAGCTGATAAGAAAAAAAAATGCACTGCTGTTTTGAAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis