Browse Element(s) Details


Os.3287.1.S1_a_at

Description gb:AK066841.1
DB_XREF= gi:32976859
TID=Os.3287.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (OSJNBa0082M15.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013087A03, full insert sequence.
FL= gb:AK066841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4010010/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3287.1.S1_a_at--412--7311Chr10:21139200..21139224 (25 bp)
GTGGTCGAACCCCTTGTAAAGTCTG
LOC_Os10g40100
Os.3287.1.S1_a_at--33--9851Chr10:21139184..21139208 (25 bp)
TAAAGTCTGCTTCGCTGCCAGTAGA
LOC_Os10g40100
Os.3287.1.S1_a_at--186--4791Chr10:21139171..21139195 (25 bp)
GCTGCCAGTAGAACCAGAATCCATT
LOC_Os10g40100
Os.3287.1.S1_a_at--556--5251Chr10:21139155..21139179 (25 bp)
GAATCCATTGGACATTGGGTGAATA
LOC_Os10g40100
Os.3287.1.S1_a_at--545--7711Chr10:21139139..21139163 (25 bp)
GGGTGAATAAGAACCGCACGCCATT
LOC_Os10g40100
Os.3287.1.S1_a_at--1074--4431Chr10:21139120..21139144 (25 bp)
GCCATTCTACTTCATATGCCCAATT
LOC_Os10g40100
Os.3287.1.S1_a_at--1059--251NONE
ATATGCCCAATTTCTCAGGAGGTCA
NONE
Os.3287.1.S1_a_at--818--7811Chr10:21138383..21138407 (25 bp)
GGTCATGAGGGATCCTCACATTGCA
LOC_Os10g40100
Os.3287.1.S1_a_at--685--2451Chr10:21138301..21138325 (25 bp)
AACACCTCCCCGATGACAAAATCAA
LOC_Os10g40100
Os.3287.1.S1_a_at--793--8511Chr10:21138273..21138297 (25 bp)
TGGAACATCTTCAGCTGATCCCGAA
LOC_Os10g40100
Os.3287.1.S1_a_at--243--4811Chr10:21138244..21138268 (25 bp)
GCTCTTCGTTCTGCCATTGAGGAAT
LOC_Os10g40100
Target Sequence 
GTGGTCGAACCCCTTGTAAAGTCTGCTTCGCTGCCAGTAGAACCAGAATCCATTGGACATTGGGTGAATAAGAACCGCAC
GCCATTCTACTTCATATGCCCAATTTCTCAGGAGGTCATGAGGGATCCTCACATTGCAGCAGATGGNTTCAGTTACGAAG
AGGAGNNCATCAAAGGATGGCTCGGCAGCGGGCACAACACCTCCCCGATGACAAAATCAACTCTGGAACATCTTCAGCTG
ATCCCGAATCTCGCTCTTCGTTCTGCCATTGAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3287.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis