Browse Element(s) Details


Os.19752.1.S1_at

Description gb:AK068549.1
DB_XREF= gi:32978566
TID=Os.19752.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative WW-domain oxidoreductase (OSJNBa0082M15.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156B05, full insert sequence.
FL= gb:AK068549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g400305/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19752.1.S1_at--178--5571Chr10:21110610..21110634 (25 bp)
GAAAGTCTACAAATAAAGAGAGTGT
LOC_Os10g40030
Os.19752.1.S1_at--1121--3071Chr10:21110599..21110623 (25 bp)
AATAAAGAGAGTGTAGTTCCTCCCA
LOC_Os10g40030
Os.19752.1.S1_at--124--351Chr10:21110598..21110622 (25 bp)
ATAAAGAGAGTGTAGTTCCTCCCAA
LOC_Os10g40030
Os.19752.1.S1_at--908--9831Chr10:21110598..21110621 (24 bp)
TAAAGAGAGTGTAGTTCCTCCCAAA
LOC_Os10g40030
Os.19752.1.S1_at--291--1351NONE
AGAGAGTGTAGTTCCTCCCAAAAAT
NONE
Os.19752.1.S1_at--120--6011Chr10:21110598..21110617 (20 bp)
GAGAGTGTAGTTCCTCCCAAAAATC
LOC_Os10g40030
Os.19752.1.S1_at--860--1311NONE
AGAGTGTAGTTCCTCCCAAAAATCT
NONE
Os.19752.1.S1_at--1033--6091NONE
GAGTGTAGTTCCTCCCAAAAATCTT
NONE
Os.19752.1.S1_at--409--7371NONE
GTGTAGTTCCTCCCAAAAATCTTCT
NONE
Os.19752.1.S1_at--615--7071NONE
TGTAGTTCCTCCCAAAAATCTTCTC
NONE
Os.19752.1.S1_at--1003--6931NONE
GTAGTTCCTCCCAAAAATCTTCTCT
NONE
Target Sequence 
GAAAGTCTACAAATAAAGAGAGTGTAGTTCCTCCCAAAAATCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis