Browse Element(s) Details


Os.46507.1.S1_at

Description gb:AK070040.1
DB_XREF= gi:32980064
TID=Os.46507.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anion transporter (OSJNBa0001O14.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036G13, full insert sequence.
FL= gb:AK070040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3998011/11transmembrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os10g39970Os.51008.1.S1_at11/1110+21077244..21078300Harpin-induced protein 1 containing protein, expressed
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46507.1.S1_at--856--3031Chr10:21089644..21089668 (25 bp)
AATCCGGCTAGCTACTATCTACAAC
LOC_Os10g39980
Os.46507.1.S1_at--340--6871Chr10:21089770..21089794 (25 bp)
GTTTGTGATCAAGCCGTACTATGTG
LOC_Os10g39980
Os.46507.1.S1_at--769--1671Chr10:21089781..21089805 (25 bp)
AGCCGTACTATGTGCATGCCAATGC
LOC_Os10g39980
Os.46507.1.S1_at--556--1111Chr10:21089819..21089843 (25 bp)
AGTGTACACTATGCTTGGTCTCAAG
LOC_Os10g39980
Os.46507.1.S1_at--219--231Chr10:21089854..21089878 (25 bp)
ATATTGGTGCCATGCTCTGGGATAA
LOC_Os10g39980
Os.46507.1.S1_at--481--271Chr10:21089970..21089994 (25 bp)
ATATGTACTGTATCCCTGTTGCCAG
LOC_Os10g39980
Os.46507.1.S1_at--102--9211Chr10:21089989..21090013 (25 bp)
TGCCAGCTGGTCTCTGTTTGAATGA
LOC_Os10g39980
Os.46507.1.S1_at--372--10071Chr10:21090050..21090074 (25 bp)
TAGTGACTCAAGTACGCATGCCGGA
LOC_Os10g39980
Os.46507.1.S1_at--643--6991Chr10:21090061..21090085 (25 bp)
GTACGCATGCCGGATTACCTCATTG
LOC_Os10g39980
Os.46507.1.S1_at--306--10471Chr10:21090075..21090099 (25 bp)
TTACCTCATTGCTCCAAACTTGCAA
LOC_Os10g39980
Os.46507.1.S1_at--123--6771Chr10:21090122..21090146 (25 bp)
GTTAATTTGGCTTTGTGCACTTGTC
LOC_Os10g39980
Target Sequence 
AATCCGGCTAGCTACTATCTACAACGATCAGAAGAAGGCAGAATGATCGAGCATGCAAGAATTCATGCAAATTACAAGGG
ATGTGATATGATCATATTAATCCAAGGAAGCTAGTATGATGATTAAGTTTGTGATCAAGCCGTACTATGTGCATGCCAAT
GCATGCATGTGTTCAAGTGTACACTATGCTTGGTCTCAAGTGGATCAATTATATTGGTGCCATGCTCTGGGATAATTAGT
TAATTAGTACTTATGATAAGCTAGAGAGGAGGATGCATTATATTGGTGCATGGTAATAAGGCAAATGAACAGCAGAATGC
ATGTATATATGTACTGTATCCCTGTTGCCAGCTGGTCTCTGTTTGAATGAAGTTGATAGCAACAAAGCTAGCACTAGCGA
ATGAGCTAGTGACTCAAGTACGCATGCCGGATTACCTCATTGCTCCAAACTTGCAATCAGTTTTGAACTTTTAATAAAGT
TAATTTGGCTTTGTGCACTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis