Browse Element(s) Details


Os.3277.1.S1_a_at

Description gb:AK062557.1
DB_XREF= gi:32972575
TID=Os.3277.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0082M15.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H02, full insert sequence.
FL= gb:AK062557.1 gb:AK103617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4005011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3277.1.S1_a_at--124--2731Chr10:21116828..21116852 (25 bp)
AAGCAGAAGGCAGCCTTGGCTCCAA
LOC_Os10g40050
Os.3277.1.S1_a_at--9--1751Chr10:21116786..21116810 (25 bp)
ACCTTCGTCTAGAGTGGTTCTCATG
LOC_Os10g40050
Os.3277.1.S1_a_at--67--5211Chr10:21116674..21116698 (25 bp)
GAATTGAGGCCTGCTGAGCTCTATT
LOC_Os10g40050
Os.3277.1.S1_a_at--397--1291Chr10:21116646..21116670 (25 bp)
AGATGCATCTTCTGGCAACGCAGTC
LOC_Os10g40050
Os.3277.1.S1_a_at--781--8231Chr10:21116633..21116657 (25 bp)
GGCAACGCAGTCAAGTGCAGCAACT
LOC_Os10g40050
Os.3277.1.S1_a_at--553--2511Chr10:21116612..21116636 (25 bp)
AACTTCCCAGCAGAACCAGCTAGTG
LOC_Os10g40050
Os.3277.1.S1_a_at--699--5551Chr10:21116587..21116611 (25 bp)
GAAACCATGCAAACCCCAGAGAAGT
LOC_Os10g40050
Os.3277.1.S1_a_at--278--1091Chr10:21116554..21116578 (25 bp)
AGGGCGATACACCTGAACCCGTCGT
LOC_Os10g40050
Os.3277.1.S1_a_at--445--2611Chr10:21116539..21116563 (25 bp)
AACCCGTCGTGCTCTAGGTACTGGA
LOC_Os10g40050
Os.3277.1.S1_a_at--228--3711Chr10:21116526..21116550 (25 bp)
CTAGGTACTGGACGGCTCTGATGCA
LOC_Os10g40050
Os.3277.1.S1_a_at--564--4811Chr10:21116512..21116536 (25 bp)
GCTCTGATGCAACTCGTGTACGTGT
LOC_Os10g40050
Target Sequence 
AAGCAGAAGGCAGCCTTGGCTCCAAAGCCAAGTGGGAGAAAAACCTTCGTCTAGAGTGGTTCTCATGGCCCCCAGAATTG
AGGCCTGCTGAGCTCTATTTCCAGATGCATCTTCTGGCAACGCAGTCAAGTGCAGCAACTTCCCAGCAGAACCAGCTAGT
GGAAACCATGCAAACCCCAGAGAAGTGGCTTCTCAGGGCGATACACCTGAACCCGTCGTGCTCTAGGTACTGGACGGCTC
TGATGCAACTCGTGTACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3277.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis