Browse Element(s) Details


Os.46502.2.S1_x_at

Description gb:NM_197645.1
DB_XREF= gi:37536649
TID=Os.46502.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0082M15.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0082M15.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4017010/11expressed protein
LOC_Os10g401405/11vesicle-associated membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed
LOC_Os10g40140Os.46454.1.S1_at11/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40140Os.46502.2.S1_x_at5/1110+21157154..21160052vesicle-associated membrane family protein, putative, expressed
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46502.2.S1_x_at--370--9951Chr10:21175909..21175933 (25 bp)
TACCCTGAGGATCTCACTTTCCTAT
LOC_Os10g40170
Os.46502.2.S1_x_at--164--7971Chr10:21175793..21175925 (25 bp)
GGATCTCACTTTCCTATTTGAGCTG
LOC_Os10g40170
Os.46502.2.S1_x_at--90--211NONE
ATTTGAGCTGGATAAGCGGTGCTAT
NONE
Os.46502.2.S1_x_at--308--7951Chr10:21175769..21175793 (25 bp)
GGATAAGCGGTGCTATTGCAATCTC
LOC_Os10g40170
Os.46502.2.S1_x_at--970--7773Chr10:21175761..21175785 (25 bp)
GGTGCTATTGCAATCTCAAGGTGGT
LOC_Os10g40170
Os.46502.2.S1_x_at--881--9014Chr10:4234517..4234618 (25 bp)
TGCAATCTCAAGGTGGTGAACAACA
NONE
Os.46502.2.S1_x_at--914--7733Chr10:21175742..21175766 (25 bp)
GGTGGTGAACAACAGCGAGCATCAT
LOC_Os10g40170
Os.46502.2.S1_x_at--524--5931Chr10:21175726..21175750 (25 bp)
GAGCATCATGCTGCATTCAAGGTCC
LOC_Os10g40170
Os.46502.2.S1_x_at--228--631Chr10:21175719..21175743 (25 bp)
ATGCTGCATTCAAGGTCCATGGCCT
LOC_Os10g40170
Os.46502.2.S1_x_at--1032--2892Chr10:21175708..21175732 (25 bp)
AAGGTCCATGGCCTTCCATTTCATG
LOC_Os10g40170
Os.46502.2.S1_x_at--181--4352Chr10:21175703..21175727 (25 bp)
CCATGGCCTTCCATTTCATGACCAA
LOC_Os10g40170
Target Sequence 
TACCCTGAGGATCTCACTTTCCTATTTGAGCTGGATAAGCGGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGAGCA
TCATGCTGCATTCAAGGTCCATGGCCTTCCATTTCATGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46502.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis